View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5553_low_5 (Length: 336)
Name: NF5553_low_5
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5553_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 26968569 - 26968884
Alignment:
| Q |
14 |
atatgaagagaaaagtaaaccaaatagtattgtttccatttaaacttaacaaaacaaccaaaaggtaaacaaacaagtttcatgattcatcacatcatga |
113 |
Q |
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| T |
26968569 |
atatgaagagaaaagtaaaccaaatagtattgtttccatataaacttaacaaagcaaccaaaaggtaaacaaacaagtttcatgattcatcacatcatga |
26968668 |
T |
|
| Q |
114 |
atataact---------acaaatcacttctttttaatatcaaggagtccaacacgagtaaccccttcatcatccaaaggtcccacatcattgaatgtctg |
204 |
Q |
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| T |
26968669 |
atataacttgatgtactacaaatcacttctttttaatatcaaggagtccaacacgagtaaccccttcatcatccaaaggtcccacatcattgaatgtctg |
26968768 |
T |
|
| Q |
205 |
accggtcatctgatccgccgctttcagcctctccgccaccgctcctgttcgagtatcctccgttctgatcaccccctcatttccacgcctccaagtttcc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26968769 |
accggtcatctgatccgccgctttcagcctctccgccaccgctcctgttcgagtatcctccgttctgatcaccccctcatttccacgcctccaagtttcc |
26968868 |
T |
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| Q |
305 |
tctccaaatcctttac |
320 |
Q |
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|||||||||||||||| |
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| T |
26968869 |
tctccaaatcctttac |
26968884 |
T |
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