View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5553_low_6 (Length: 328)

Name: NF5553_low_6
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5553_low_6
NF5553_low_6
[»] chr5 (1 HSPs)
chr5 (13-312)||(37087701-37088000)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 37087701 - 37088000
Alignment:
Q  13 catcaatgcattcaagcaagtggcaaacagttatcacttctctttgcagcactttatacaatagctttaggtggtggaggaataaaatccaatgtgtcag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37087701 catcaatgcattcaagcaagtggcaaacagttatcacttctctttgcagcactttatacaatagctttaggtggtggaggaataaaatccaatgtgtcag 37087800  T
Q  113 gatttggatctgatcaatttgacacaaatgatccaaaggaagagaagaatatgatatttttcttcaatagattctacttttttataagtattggatcctt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37087801 gatttggatctgatcaatttgacacaaatgatccaaaggaagagaagaatatgatatttttcttcaatagattctacttttttataagtattggatcctt 37087900  T
Q  213 attttcagtggttgtattggtttatgttcaagacaatataggaagaggttggggatatggaatttcagcagggacaatgttggtagcagttggtattttg 312  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37087901 gttttcagttgttgtattggtttatgttcaagacaatataggaagaggttggggatatggaatttcagcagggacaatgttggtagcagttggtattttg 37088000  T

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