View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5553_low_9 (Length: 310)

Name: NF5553_low_9
Description: NF5553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5553_low_9
NF5553_low_9
[»] chr3 (2 HSPs)
chr3 (171-294)||(51848235-51848358)
chr3 (13-123)||(51848075-51848185)
[»] chr4 (2 HSPs)
chr4 (172-294)||(26887921-26888044)
chr4 (13-123)||(26888090-26888200)
[»] chr5 (2 HSPs)
chr5 (172-294)||(13578278-13578400)
chr5 (13-123)||(13578438-13578548)
[»] chr7 (2 HSPs)
chr7 (171-284)||(8943756-8943869)
chr7 (13-123)||(8943593-8943703)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 51848235 - 51848358
Alignment:
Q  171 caagttaaggaaatggaagtacatacaaccacaaaacctgcatatatgtacttagataattttttaaaagttatttttagtttatcttcgtaagctctcc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51848235 caagttaaggaaatggaagtacatacaaccacaaaacctgcatatatgtacttagataattttttaaaagttatttttagtttatcttcgtaagctctcc 51848334  T
Q  271 atgatagcttaaagaatagcttat 294  Q
     |||||||||||||||||||||||    
T  51848335 gtgatagcttaaagaatagcttat 51848358  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 51848075 - 51848185
Alignment:
Q  13 aaaatagacctaagcaactaacagtatcaaataaaattattatgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcattatttttaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  51848075 aaaatagacctaagcaactaacagtatcaaataaaattattctgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcatttattttaat 51848174  T
Q  113 tcaacctctta 123  Q
    |||||||||||    
T  51848175 tcaacctctta 51848185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 26888044 - 26887921
Alignment:
Q  172 aagttaaggaaatggaagtacatacaaccacaaaacctgcatatatgtacttagataattttttaaaagttatttttagtttatcttcgtaagctctcca 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26888044 aagttaaggaaatggaagtacatacaaccacaaaacctgcatatatgtacttagataattttttaaaagttatttttagtttatcttcgtaagctctcca 26887945  T
Q  272 tgatagc-ttaaagaatagcttat 294  Q
    ||||||| ||||||||||||||||    
T  26887944 tgatagctttaaagaatagcttat 26887921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 26888200 - 26888090
Alignment:
Q  13 aaaatagacctaagcaactaacagtatcaaataaaattattatgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcattatttttaat 112  Q
    |||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |||| |||    
T  26888200 aaaatagacctaagcaactaaaggtatcaaataaaattattctgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcaactttttcaat 26888101  T
Q  113 tcaacctctta 123  Q
    |||||||||||    
T  26888100 tcaacctctta 26888090  T

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Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 13578400 - 13578278
Alignment:
Q  172 aagttaaggaaatggaagtacatacaaccacaaaacctgcatatatgtacttagataattttttaaaagttatttttagtttatcttcgtaagctctcca 271  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13578400 aagttaaggaaatggaagtacatacaaccacagaacctgcatatatgtacttagataattttttaaaagttatttttaatttatcttcgtaagctctcca 13578301  T
Q  272 tgatagcttaaagaatagcttat 294  Q
    |||||||||||||||||||||||    
T  13578300 tgatagcttaaagaatagcttat 13578278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 13578548 - 13578438
Alignment:
Q  13 aaaatagacctaagcaactaacagtatcaaataaaattattatgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcattatttttaat 112  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13578548 aaaatagacctaagcatctaacagtatcaaataaaattattctgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcattttttttaat 13578449  T
Q  113 tcaacctctta 123  Q
    |||||||||||    
T  13578448 tcaacctctta 13578438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 8943756 - 8943869
Alignment:
Q  171 caagttaaggaaatggaagtacatacaaccacaaaacctgcatatatgtacttagataattttttaaaagttatttttagtttatcttcgtaagctctcc 270  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8943756 caagttaaggaaatggaagtacatacaaccacagaacctgcatatatgtacttagataattttttaaaagttatttttaatttatcttcgtaagctctcc 8943855  T
Q  271 atgatagcttaaag 284  Q
    ||||||||||||||    
T  8943856 atgatagcttaaag 8943869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 8943593 - 8943703
Alignment:
Q  13 aaaatagacctaagcaactaacagtatcaaataaaattattatgatagttgaagcaaccatatatcttaggagatgcaagcacaaatcattatttttaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||    
T  8943593 aaaatagacctaagcaactaacagtatcaaataaaattattctgatagttgaagcaaccatatatcttaggagatgcaagcataaatcatttttttaaat 8943692  T
Q  113 tcaacctctta 123  Q
    |||||||||||    
T  8943693 tcaacctctta 8943703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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