View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554-Insertion-10 (Length: 269)
Name: NF5554-Insertion-10
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 8358464 - 8358219
Alignment:
| Q |
8 |
ataattaatgttgtgatctctctgtaatttgttgcagaacaagtctcctagatttgttaacggtgagaaagcacaagtaaacatgttcttcaagttcttc |
107 |
Q |
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| T |
8358464 |
ataattaatgttgtgatctctctgtaatttgttgcagaacaagtctcctagatttgttaacggtgagaaagcacaagtaaacatgttcttcaagttcttc |
8358365 |
T |
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| Q |
108 |
caactcatccaaaaagctagactcttgatcactaaattcactcataaacctcttcaatatttcacatttactaccaacattcttcacacaaacttgagca |
207 |
Q |
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| T |
8358364 |
caactcatccaaaaatcttgactcttgatcactaaattcactcataaacctcttcaatatttcacatttactaccaacattcttcacacaaacttgagca |
8358265 |
T |
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| Q |
208 |
accatttttctatgttccacctcatcattcaacctcttcaccatcc |
253 |
Q |
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| T |
8358264 |
accatttttctatgttccacctcatcattcaacctcttcaccatcc |
8358219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 253
Target Start/End: Original strand, 28593124 - 28593354
Alignment:
| Q |
26 |
tctctgtaatttgttgcagaacaagtctcctagatttgttaacggtgagaaagcacaagtaaacatgttcttcaagttcttccaactcatccaaaaagct |
125 |
Q |
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|||||||||||||||||| |||||||||||||||||| || | ||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
28593124 |
tctctgtaatttgttgcataacaagtctcctagatttattgatggtaagaaagcacaagtaaacatgttcttcaagctcttccaactgatccaaaaagct |
28593223 |
T |
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| Q |
126 |
agactcttgatcactaaattcactcataaacctcttcaatatttcacatttactaccaac---attcttcacacaaacttgagcaaccatttttctatgt |
222 |
Q |
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|||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||| ||||| |
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| T |
28593224 |
agactcttgatctcgatattcactcataaccctcttcaatatttcacatttactaccaacattattcttcacacaaacatcagcaaaaattttcctatgc |
28593323 |
T |
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| Q |
223 |
tccacctcatcattcaacctcttcaccatcc |
253 |
Q |
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||||| ||||||||||||||||||||||||| |
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| T |
28593324 |
tccacttcatcattcaacctcttcaccatcc |
28593354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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