View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5554-Insertion-3 (Length: 807)
Name: NF5554-Insertion-3
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554-Insertion-3 |
 | |
|
| [»] chr7 (18 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 18)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 513 - 807
Target Start/End: Original strand, 2103271 - 2103562
Alignment:
| Q |
513 |
aattcaaagcaggatctttcaaacaatctttattgcttttacatacaaaggaaactcttacaaaatgcaattacaagaacagaaggaaactaaaacaaat |
612 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2103271 |
aattcaaagcacgctctttcgaacaacctttattgcttttacatacaaaggaaactcttacaatatgcaattacaagaacagaaggaaactaaaacaaat |
2103370 |
T |
|
| Q |
613 |
aagaaccataaatggagaggactaataactttatattgctttcgactcacaagacccttttaagctataacataaaaacaactcattaatgtctcttaaa |
712 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||||| ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
2103371 |
aagaac-ataaatagagaggactaatatctttat--tgcattcgactcacaagacccttttaaaccataacataaaaacaactcattaatgtctcttaaa |
2103467 |
T |
|
| Q |
713 |
aatcttattaagaaatattataaatgaaacgccaaggtaatctctacaccattcaaatacctgcggaaagtaagtgtttcccaatgcaactccag |
807 |
Q |
| |
|
||||||||||| || ||||||| |||||||| |||| |||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
2103468 |
aatcttattaaccaaaattataactgaaacgctaaggcaatctctataccatgcaaatacctgcagaaagtaagtgtttcccaatgccactccag |
2103562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 505 - 807
Target Start/End: Original strand, 2096980 - 2097265
Alignment:
| Q |
505 |
caaaatgtaattcaaagcaggatctttcaaacaatctttattgcttttacatacaaaggaaactcttacaaaatgcaattacaagaacagaaggaaacta |
604 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2096980 |
caaaatgtaattcaaagcacactctttcaaacaacctttattgcttttacatagaaaggaaactcttacagaatgcaattacaagaacagaaggaaacta |
2097079 |
T |
|
| Q |
605 |
aaacaaataagaaccataaatggagaggactaataactttatattgctttcgactcacaagacccttttaagctataacataaaaacaactcattaatgt |
704 |
Q |
| |
|
| ||||||| ||||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2097080 |
agacaaatatt---------------ggactaatatgtttat--tgctttggactcacatgacccttttaagctataacataaaaacaactcactaatgt |
2097162 |
T |
|
| Q |
705 |
ctcttaaaaatcttattaagaaatattataaatgaaacgccaaggtaatctctacaccattcaaatacctgcggaaagtaagtgtttcccaatgcaactc |
804 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2097163 |
ctcttaaaaatcttattaagaaataatgtaaatgaaacgccaaggtaatctctacaccattcaaatacctgcggaaagtaagtgtttcccaatgcaactc |
2097262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 516 - 807
Target Start/End: Original strand, 2136868 - 2137155
Alignment:
| Q |
516 |
tcaaagcaggatctttcaaacaatctttattgcttttacatacaaaggaaactcttacaaaatgcaattacaagaacagaaggaaactaaaacaaataag |
615 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2136868 |
tcaaagcacgctctttcaaacaacctttattgcttttacatacataggaaactcttacagaatgcaattacaagaacagaaggaaactaaaacaaattag |
2136967 |
T |
|
| Q |
616 |
aaccataaatggagaggactaataactttatattgctttcgactcacaagacccttttaagctataacataaaaacaactcattaatgtctcttaaaaat |
715 |
Q |
| |
|
|| ||||||| | |||||||| || | | ||||| ||| ||||||||| |||||||||||| |||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
2136968 |
aaacataaatagggaggactagta--tgtttattgttttggactcacaacacccttttaagccataaaataataacaact--ttaatgtctcttaaaaat |
2137063 |
T |
|
| Q |
716 |
cttattaagaaatattataaatgaaacgccaaggtaatctctacaccattcaaatacctgcggaaagtaagtgtttcccaatgcaactccag |
807 |
Q |
| |
|
||||||||| || ||||||| |||||||| || || ||||||| ||||| ||||||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
2137064 |
cttattaaggaaaattataactgaaacgctaacgtgatctctataccatgcaaatacctgcagaaagtaactgtttcccaatgccactccag |
2137155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 529 - 807
Target Start/End: Complemental strand, 2247518 - 2247242
Alignment:
| Q |
529 |
tttcaaacaatctttattgcttttacatacaaaggaaactcttacaaaatgcaattacaagaacagaaggaaactaaaacaaataagaaccataaatgga |
628 |
Q |
| |
|
|||| ||||| ||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2247518 |
tttccaacaaccttaatggcttttacatgcaaaggaaactcttacaaaatgaaattacaagaacagaaggaaactaaaacaaataagaaccataaatagg |
2247419 |
T |
|
| Q |
629 |
gaggactaataactttatattgctttcgactcacaagacccttttaagctataacataaaaacaactcattaatgtctcttaaaaatcttattaagaaat |
728 |
Q |
| |
|
||| ||||||| ||||| |||| | ||||||||| || |||||||| ||||||||||| |||||| |||||| |||| ||||||||||||||| || |
|
|
| T |
2247418 |
gagaactaatatgtttat--tgctatggactcacaatactattttaagccataacataaaagcaactcgttaatgcctctcaaaaatcttattaagcaaa |
2247321 |
T |
|
| Q |
729 |
attataaatgaaacgccaaggtaatctctacaccattcaaatacctgcggaaagtaagtgtttcccaatgcaactccag |
807 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||||| |||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
2247320 |
attataactgaaacgctaaggcaatctctacaccatgcaaatacctgtggaaagtaagtgcttcccaatgcaactccag |
2247242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 646 - 807
Target Start/End: Original strand, 2124477 - 2124638
Alignment:
| Q |
646 |
tattgctttcgactcacaagacccttttaagctataacataaaaacaactcattaatgtctcttaaaaatcttattaagaaatattataaatgaaacgcc |
745 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
2124477 |
tattgctttggactcatatgacccttttaagctataacataaaaacaactcactaatgtctcttaaaaatcttattaagaaataatgtaaatgaaacgcc |
2124576 |
T |
|
| Q |
746 |
aaggtaatctctacaccattcaaatacctgcggaaagtaagtgtttcccaatgcaactccag |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2124577 |
aaggtaatctctacaccattcaaatacctgcggaaagtaagtgtttcccaatgcaaatccag |
2124638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 568 - 807
Target Start/End: Complemental strand, 2693666 - 2693426
Alignment:
| Q |
568 |
tcttacaaaatgcaattacaagaacagaaggaaactaaaacaaataagaaccataaatggagaggactaataactttatattgctttcgactcacaagac |
667 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| |||||||| ||||| |||||||||||| |||||||||| || ||||| ||||||| ||| ||||||| |
|
|
| T |
2693666 |
tcttaccagatgcaattacaacaacaaaagaaaactaaagcaaatgagaaccataaatacagaggactaacaaatttat--tgctttcaactaacaagac |
2693569 |
T |
|
| Q |
668 |
ccttttaagctat---aacataaaaacaactcattaatgtctcttaaaaatcttattaagaaatattataaatgaaacgccaaggtaatctctacaccat |
764 |
Q |
| |
|
|||||| ||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||||||| |
|
|
| T |
2693568 |
ccttttgagccatcataacataaaaacaattcattaatgtctcttaaaaatcttattaagaaatatcataactgaaacgctaaggcaatctctacaccat |
2693469 |
T |
|
| Q |
765 |
tcaaatacctgcggaaagtaagtgtttcccaatgcaactccag |
807 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
2693468 |
gcaaatacctgtggaaagtaagtgtttcccaatgcaacaccag |
2693426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 261 - 381
Target Start/End: Complemental strand, 2120097 - 2119977
Alignment:
| Q |
261 |
aatcctaatcagtttgatgaacatccctgataattataatcaataatatgtgcctagtattttatctcaatgtttcagtttaaaagattaatatagaatg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2120097 |
aatcctaatcagtttgatgaacatccctgaaaattattatcaataatatatgcctagtattttatctcaatgtttcagtttaaaagattaagatagaatg |
2119998 |
T |
|
| Q |
361 |
gtgtttctgtgttctcttgtt |
381 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
2119997 |
gtgtttctgtggtctcttgtt |
2119977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 677 - 807
Target Start/End: Original strand, 2055033 - 2055163
Alignment:
| Q |
677 |
ctataacataaaaacaactcattaatgtctcttaaaaatcttattaagaaatattataaatgaaacgccaaggtaatctctacaccattcaaatacctgc |
776 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
2055033 |
ctataacataaaaacaactcattaatgtctcttaaaaatcttattaagcaaaattataactgaaacgctaaggcaatctctacaccatgcaaatacctgg |
2055132 |
T |
|
| Q |
777 |
ggaaagtaagtgtttcccaatgcaactccag |
807 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |
|
|
| T |
2055133 |
agaaagtaagtgtttcccaatgccactccag |
2055163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 502 - 636
Target Start/End: Original strand, 2054902 - 2055035
Alignment:
| Q |
502 |
taccaaaatgtaattcaaagcaggatctttcaaacaatctttattgcttttacatacaaaggaaactcttacaaaatgcaattacaagaacagaaggaaa |
601 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||| |||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
2054902 |
taccaaaatgtaattcaatgcacgctctttcaaacaa-ctttattgcttttacacagaaaggaaactcttacaatatgcaattacaagaacagaagaaaa |
2055000 |
T |
|
| Q |
602 |
ctaaaacaaataagaaccataaatggagaggacta |
636 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||| |
|
|
| T |
2055001 |
ctgaaacaaataagaaccataaatagagaggacta |
2055035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 681 - 807
Target Start/End: Original strand, 2071435 - 2071561
Alignment:
| Q |
681 |
aacataaaaacaactcattaatgtctcttaaaaatcttattaagaaatattataaatgaaacgccaaggtaatctctacaccattcaaatacctgcggaa |
780 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| || ||||||| |||||||| |||| |||||||| ||||| ||||||||||| ||| |
|
|
| T |
2071435 |
aacataaaaacaactcactaatgtctcttaaaaatcttattaagcaaaattataactgaaacgctaaggcaatctctataccatgcaaatacctgcagaa |
2071534 |
T |
|
| Q |
781 |
agtaagtgtttcccaatgcaactccag |
807 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
2071535 |
agtaactgtttcccaatgcaactccag |
2071561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 513 - 620
Target Start/End: Original strand, 2071306 - 2071411
Alignment:
| Q |
513 |
aattcaaagcaggatctttcaaacaatctttattgcttttacatacaaaggaaactcttacaaaatgcaattacaagaacagaaggaaactaaaacaaat |
612 |
Q |
| |
|
||||||||||| | ||| || ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2071306 |
aattcaaagcacgctctatcgaacaacctttattgcttttacatacaaaggaaactctta--atatgcaattacaagaacagaaggaaactaaaacaaat |
2071403 |
T |
|
| Q |
613 |
aagaacca |
620 |
Q |
| |
|
|||||||| |
|
|
| T |
2071404 |
aagaacca |
2071411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 2054504 - 2054591
Alignment:
| Q |
8 |
aaaactcttgaagcctatcaacagatggtgcttgcagcgaagttagattattgagcgtgtctcgtaaaatagatgaaattgtcacata |
95 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2054504 |
aaaactcttggagcctatcaatagatggtgcttgcagagaaattagatttttgagtgtgtctcgtaaaatagatgaaattgtcacata |
2054591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 577 - 635
Target Start/End: Original strand, 2054201 - 2054259
Alignment:
| Q |
577 |
atgcaattacaagaacagaaggaaactaaaacaaataagaaccataaatggagaggact |
635 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2054201 |
atgcaattacaagaacaaaaggaaactaaaacaaataagaaccataaatagagaggact |
2054259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 701 - 764
Target Start/End: Original strand, 2120527 - 2120590
Alignment:
| Q |
701 |
atgtctcttaaaaatcttattaagaaatattataaatgaaacgccaaggtaatctctacaccat |
764 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
2120527 |
atgtctcttaaaaatcttattaagcaaaattataactgaaacgccaaggtaatctctataccat |
2120590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 758 - 807
Target Start/End: Original strand, 2121227 - 2121276
Alignment:
| Q |
758 |
acaccattcaaatacctgcggaaagtaagtgtttcccaatgcaactccag |
807 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
2121227 |
acaccatgcaaatacctgcagaaagtaagtgtttcccaatgccactccag |
2121276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 591
Target Start/End: Original strand, 2120359 - 2120396
Alignment:
| Q |
554 |
catacaaaggaaactcttacaaaatgcaattacaagaa |
591 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2120359 |
catacaaaggaaactcttacaatatgcaattacaagaa |
2120396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 2245249 - 2245183
Alignment:
| Q |
35 |
gtgcttgcagcgaagttagattattgagcgtgtctcgtaaaatagatgaaattgtcacatagctaag |
101 |
Q |
| |
|
|||||| || |||||||||||| |||| |||||| ||||| |||||||||| |||||||| ||||| |
|
|
| T |
2245249 |
gtgctttcaacgaagttagatttgtgagtgtgtctggtaaagtagatgaaatagtcacataactaag |
2245183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 597
Target Start/End: Original strand, 2120396 - 2120429
Alignment:
| Q |
564 |
aaactcttacaaaatgcaattacaagaacagaag |
597 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
2120396 |
aaactcttacaatatgcaattacaagaacagaag |
2120429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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