View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554-Insertion-4 (Length: 707)
Name: NF5554-Insertion-4
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554-Insertion-4 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 680; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 8 - 707
Target Start/End: Complemental strand, 51214992 - 51214293
Alignment:
| Q |
8 |
aatctctcccttcacatcttccagtatcattcctgattcatcactggtatctatttttgatttctgatcaagaatagcaaatactgaagcagctgaactt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214992 |
aatctctcccttcacatcttccagtatcattcctgattcatcactggtatctatttttgatttctgatcaagaatagcaaatactgaagcagctgaactt |
51214893 |
T |
|
| Q |
108 |
ttggctttactagctcctggagccatgaagccggattgagataatgcgacagctgccgttgtgagagagaaaaatacctgaaaagaaattaaatgtttaa |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214892 |
ttggctttactagctcctggagccatgaagccggattgagataatgcgacagctgccgttgtgagagagaaaaatacctgaaaagaaattaaatgtttaa |
51214793 |
T |
|
| Q |
208 |
tgctaaaagaatgtgatgagctcagagttcaaccaaagagcactatatctgaaatggcctccgagttgggaccgtaacttacttgaaaaactcctgacat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214792 |
tgctaaaagaatgtgatgagctcagagttcaaccaaagagcactatatctgaaatggcctccgagttgggaccgtaacttacttgaaaaactcctgacat |
51214693 |
T |
|
| Q |
308 |
cgaagttttgccattctcaataagttgggcgccagcataaaaactgattgcatagacacaaaacagaaagaagattgctaacccaaaaccagttccactg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214692 |
cgaagttttgccattctcaataagttgggcgccagcataaaaactgattgcatagacacaaaacagaaagaagattgctaacccaaaaccagttccactg |
51214593 |
T |
|
| Q |
408 |
actaaaccctgcctttttcctgtctggaatggtactacacatttcttctggtataattctatcaccttctcttcggcacagaaagcagaaactgttctga |
507 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
51214592 |
actaaaccctgcctttttcctgtctggaatggtactacacatttcttctggtataattccatcactttctcttcggcacagaaagcagaaactgttctga |
51214493 |
T |
|
| Q |
508 |
tattccctactgcatcgtttgctacttgacttgcttcctcgtatagtttctgtgaaacatatttagagcatagaaacatcatgtcaaatgaagattagta |
607 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51214492 |
tattccctactgcgtcgttcgctacttgacttgcttcctcgtatagtttctgtgaaacatatttagagcatagaaacatcatgtcaaatgaagattagta |
51214393 |
T |
|
| Q |
608 |
caaatttcatatagaaacaaaatatgtactaaataaatttagagacaaaaatgcattgtgacacaattgaagcacattgtgtaaggcacaaacctttgcg |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51214392 |
caaatttcatatagaaacaaaatatgtactaaataaatttagagacaaaaatgcattgtgacgcaattgaagcacattgtgtaaggcacaaacctttgcg |
51214293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 459 - 560
Target Start/End: Original strand, 29935477 - 29935578
Alignment:
| Q |
459 |
tataattctatcaccttctcttcggcacagaaagcagaaactgttctgatattccctactgcatcgtttgctacttgacttgcttcctcgtatagtttct |
558 |
Q |
| |
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|||||||| |||||||||||||| |||||||||| |||||||||||| ||| |||||| ||||| ||||| |||||||||||||||||||| | ||||| |
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| T |
29935477 |
tataattccatcaccttctcttcagcacagaaagaagaaactgttcttatacaccctaccgcatcatttgccacttgacttgcttcctcgtacaatttct |
29935576 |
T |
|
| Q |
559 |
gt |
560 |
Q |
| |
|
|| |
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|
| T |
29935577 |
gt |
29935578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 547
Target Start/End: Complemental strand, 51201481 - 51201393
Alignment:
| Q |
459 |
tataattctatcaccttctcttcggcacagaaagcagaaactgttctgatattccctactgcatcgtttgctacttgacttgcttcctc |
547 |
Q |
| |
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|||||||| |||||||||||||| | |||||||| || ||||||||| ||| ||||||||||||| || || ||||||||||||||||| |
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| T |
51201481 |
tataattccatcaccttctcttcagaacagaaagaagcaactgttcttatactccctactgcatcattcgccacttgacttgcttcctc |
51201393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 459 - 560
Target Start/End: Complemental strand, 51147532 - 51147431
Alignment:
| Q |
459 |
tataattctatcaccttctcttcggcacagaaagcagaaactgttctgatattccctactgcatcgtttgctacttgacttgcttcctcgtatagtttct |
558 |
Q |
| |
|
|||||||| ||||||||||| || ||||| |||| ||||| ||||| ||| ||||||| ||||| ||||| |||||||||||||||||||| | ||||| |
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| T |
51147532 |
tataattccatcaccttctcctcagcacaaaaagaggaaacagttcttatactccctacagcatcatttgccacttgacttgcttcctcgtacaatttct |
51147433 |
T |
|
| Q |
559 |
gt |
560 |
Q |
| |
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|| |
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|
| T |
51147432 |
gt |
51147431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 29934680 - 29934767
Alignment:
| Q |
12 |
tctcccttcacatcttccagtatcattcctgattcatcactggtatctatttttgatttctgatcaagaatagcaaatactgaagcag |
99 |
Q |
| |
|
|||||||| || ||||||||| |||| || ||||||||||| | |||||||| ||| |||||||||||||| ||||||| |||||||| |
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| T |
29934680 |
tctcccttgacttcttccagtgtcatcccagattcatcactagaatctatttgtgacttctgatcaagaattgcaaatattgaagcag |
29934767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 51148450 - 51148353
Alignment:
| Q |
12 |
tctcccttcacatcttccagtatcattcctgattcatcactggtatctatttttgatttctgatcaagaatagcaaatactgaagcagctgaactttt |
109 |
Q |
| |
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|||||||| || ||||||||| |||| || ||||||||||| | ||||||| ||| |||||||||||||||||||||| |||||||| | |||||| |
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| T |
51148450 |
tctcccttgacttcttccagtgtcatgccagattcatcactagagtctatttgtgacttctgatcaagaatagcaaatatggaagcagcagcactttt |
51148353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 445 - 544
Target Start/End: Complemental strand, 51158701 - 51158602
Alignment:
| Q |
445 |
cacatttcttctggtataattctatcaccttctcttcggcacagaaagcagaaactgttctgatattccctactgcatcgtttgctacttgacttgcttc |
544 |
Q |
| |
|
||||||| | || ||||||||| || ||||||| ||| ||||| |||| || ||||||||| || ||||||| ||||| ||||| |||||||||||||| |
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| T |
51158701 |
cacatttttgcttgtataattccattaccttcttttcagcacaaaaagaagcaactgttcttatgctccctacagcatcatttgccacttgacttgcttc |
51158602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 51159342 - 51159255
Alignment:
| Q |
12 |
tctcccttcacatcttccagtatcattcctgattcatcactggtatctatttttgatttctgatcaagaatagcaaatactgaagcag |
99 |
Q |
| |
|
|||||||| || ||||||||| |||| || |||||||||| | ||||||| ||| |||||||||||||||||||||| ||||||| |
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| T |
51159342 |
tctcccttgacttcttccagtgtcatgccagattcatcaccagggtctatttgtgacttctgatcaagaatagcaaatatggaagcag |
51159255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 282 - 650
Target Start/End: Original strand, 49735391 - 49735760
Alignment:
| Q |
282 |
taacttacttgaaaaactcctgacatcgaagttttgccattctcaataagttgggcgccagcataaaaactgattgcatagacacaaaacagaaagaaga |
381 |
Q |
| |
|
||||||||||||||||| |||| || || ||||||||||||| || |||||| || ||||||||||||||| |||||| ||||| |||| |||||||| |
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| T |
49735391 |
taacttacttgaaaaacatctgatattgaggttttgccattcttaacaagttgtgctccagcataaaaactgcatgcataaacacagaacataaagaaga |
49735490 |
T |
|
| Q |
382 |
ttgctaacccaaaaccagttccactgactaaaccctgcctttttcctgtctggaatggtactacacatttcttctggtataattctatcaccttctcttc |
481 |
Q |
| |
|
||| ||| ||||||||| |||||| |||| ||||||||||||||||||||| | |||||||||||||||||| |||||||| || |||||||||||||| |
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|
| T |
49735491 |
ttgataagccaaaaccaactccactaactataccctgcctttttcctgtctgtactggtactacacatttcttttggtataactccatcaccttctcttc |
49735590 |
T |
|
| Q |
482 |
ggcacagaaagcagaaactgttctgatattccctactgcatcgtttgctacttgacttgcttcctcgtatagtttctgtgaaacatatttagagcataga |
581 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| || |||||||| |||||||| |||||||||| |
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| T |
49735591 |
agcacagaaagcggaaactgttctgatattccctactgcatcattcgctacttgacttgcttcctcatactgtttctgtcaaacatatatagagcatagt |
49735690 |
T |
|
| Q |
582 |
aacatcatgtcaaatgaagattagtacaaatttcatatagaaa-caaaatatgtactaaataaatttaga |
650 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| ||||| ||| |||||||||||||||||||||||||| |
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|
| T |
49735691 |
aacatcatgtcaaatggagattagtactaattaaatatataaagcaaaatatgtactaaataaatttaga |
49735760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 49734997 - 49735215
Alignment:
| Q |
12 |
tctcccttcacatcttccagtatcattcctgattcatcactggtatctatttttgatttctgatcaagaatagcaaatactgaagcagctgaacttttgg |
111 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||| |||||| | || ||||| | |
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|
| T |
49734997 |
tctcccttcacatcttccaatgtcattcctgattcttcactagagtctatttttgattcctgatcaagaatagcaaatatagaagcaacagagctttttg |
49735096 |
T |
|
| Q |
112 |
ctttactagctcctggagccatgaagccggattgagataatgcgacagctgccgttgtgagagagaaaaatacctgaaaa----gaaattaaatgtttaa |
207 |
Q |
| |
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|||||||||||||| ||||||||| || ||||||| || |||||| |||||| |||||||||||||||| ||||||||| ||||||||||| || | |
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| T |
49735097 |
ctttactagctcctacagccatgaatccagattgagctattgcgacggctgccattgtgagagagaaaaacacctgaaaattaggaaattaaatgcttga |
49735196 |
T |
|
| Q |
208 |
tgctaaaagaatgtgatga |
226 |
Q |
| |
|
||||| || |||||||||| |
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|
| T |
49735197 |
tgctagaacaatgtgatga |
49735215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 445 - 547
Target Start/End: Complemental strand, 36287848 - 36287746
Alignment:
| Q |
445 |
cacatttcttctggtataattctatcaccttctcttcggcacagaaagcagaaactgttctgatattccctactgcatcgtttgctacttgacttgcttc |
544 |
Q |
| |
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||||||| || ||||| || || || ||||||||||| |||||||||| || ||||||||| || || | || ||||| ||||| |||||||||||||| |
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| T |
36287848 |
cacattttttttggtacaagtccataaccttctcttcagcacagaaagaagcaactgttctaatgttactcacagcatcatttgccacttgacttgcttc |
36287749 |
T |
|
| Q |
545 |
ctc |
547 |
Q |
| |
|
||| |
|
|
| T |
36287748 |
ctc |
36287746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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