View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5554-Insertion-7 (Length: 139)

Name: NF5554-Insertion-7
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5554-Insertion-7
NF5554-Insertion-7
[»] chr1 (2 HSPs)
chr1 (8-139)||(5905884-5906015)
chr1 (8-139)||(5902400-5902531)
[»] chr8 (10 HSPs)
chr8 (13-126)||(2004682-2004795)
chr8 (8-134)||(2018454-2018580)
chr8 (8-135)||(1963231-1963358)
chr8 (11-137)||(2011675-2011801)
chr8 (13-137)||(1968829-1968953)
chr8 (13-137)||(2008062-2008186)
chr8 (8-125)||(2015071-2015188)
chr8 (11-137)||(1964893-1965019)
chr8 (38-86)||(560699-560747)
chr8 (11-62)||(2436704-2436755)
[»] scaffold0078 (4 HSPs)
scaffold0078 (16-100)||(22055-22139)
scaffold0078 (16-96)||(2805-2885)
scaffold0078 (16-96)||(57348-57428)
scaffold0078 (20-88)||(60904-60972)
[»] scaffold0184 (2 HSPs)
scaffold0184 (16-96)||(15416-15496)
scaffold0184 (20-88)||(11872-11940)
[»] chr7 (2 HSPs)
chr7 (15-96)||(16566461-16566542)
chr7 (15-96)||(16599120-16599201)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 9e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 5906015 - 5905884
Alignment:
Q  8 ttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggct 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  5906015 ttatgattactcaattccaaaccaatagctagctcatcagtttgttcttgtgaaagtgcaccaccgcttccaaaagaaacatacaaaactgaacaaggct 5905916  T
Q  108 gctgtttatctaaccatgtcaaacactccata 139  Q
    ||||||||||||||||||||||||||||||||    
T  5905915 gctgtttatctaaccatgtcaaacactccata 5905884  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 5902531 - 5902400
Alignment:
Q  8 ttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggct 107  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  5902531 ttatgattactcaattccaaaccaatagccaactcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggtt 5902432  T
Q  108 gctgtttatctaaccatgtcaaacactccata 139  Q
    | ||||||| ||||||||||| ||||||||||    
T  5902431 gttgtttatgtaaccatgtcagacactccata 5902400  T

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Target: chr8 (Bit Score: 70; Significance: 6e-32; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 2004682 - 2004795
Alignment:
Q  13 attactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgt 112  Q
    |||||||||||||||||| | ||| |||||| ||||||||||||||||||||| ||| ||||| |||||||| |||| ||||||||||||||| ||||||    
T  2004682 attactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgt 2004781  T
Q  113 ttatctaaccatgt 126  Q
    ||||| ||||||||    
T  2004782 ttatccaaccatgt 2004795  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 2018454 - 2018580
Alignment:
Q  8 ttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggct 107  Q
    ||||||||||||||||||||||| | ||| ||||||| |||||||||||| |||||||  |||||||| ||||||||||||| ||||||||||||||  |    
T  2018454 ttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagttt 2018553  T
Q  108 gctgtttatctaaccatgtcaaacact 134  Q
    ||||||| || ||||||| || |||||    
T  2018554 gctgtttgtccaaccatgccagacact 2018580  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 1963358 - 1963231
Alignment:
Q  8 ttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggct 107  Q
    ||||||||||||||||||||||| | ||| | |||||||||||||||||| |||||||  |||||||| ||||||||||||| |||||||||||||||      
T  1963358 ttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggac 1963259  T
Q  108 gctgtttatctaaccatgtcaaacactc 135  Q
      ||||| || |||||||||| ||||||    
T  1963258 attgtttgtccaaccatgtcagacactc 1963231  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 2011675 - 2011801
Alignment:
Q  11 tgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgct 110  Q
    |||||||||||||||||||| | ||| |||||| |||||||||| |||||||||| ||||||||| || ||||| |||| ||||||||||||||  || |    
T  2011675 tgattactcaattccaaacccaaagccagctcaacaatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgtt 2011774  T
Q  111 gtttatctaaccatgtcaaacactcca 137  Q
    |||| |||||||||| || ||||||||    
T  2011775 gtttgtctaaccatgacagacactcca 2011801  T

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Target: chr8; HSP #5
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 1968953 - 1968829
Alignment:
Q  13 attactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgt 112  Q
    |||||||||||||||||| | ||| |||||  |||||||||| |||||||||| ||||||||| || ||||| |||| ||||||||| ||||||||||||    
T  1968953 attactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgt 1968854  T
Q  113 ttatctaaccatgtcaaacactcca 137  Q
    ||||| ||||| | || ||||||||    
T  1968853 ttatccaaccaggccagacactcca 1968829  T

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Target: chr8; HSP #6
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 2008062 - 2008186
Alignment:
Q  13 attactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgt 112  Q
    |||||||||||||||||| | |||||||||  ||||||| || |||||||||| ||| ||||| |||||||| |||| |||||| |||||||| ||||||    
T  2008062 attactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctgt 2008161  T
Q  113 ttatctaaccatgtcaaacactcca 137  Q
    ||||| ||||| | || ||||||||    
T  2008162 ttatccaaccaggccagacactcca 2008186  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 2015071 - 2015188
Alignment:
Q  8 ttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggct 107  Q
    ||||||||||||||||||||||| | ||| ||||||| |||||||||||| |||||||  |||||||| || ||||| |||| || |||||||||||||     
T  2015071 ttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggcc 2015170  T
Q  108 gctgtttatctaaccatg 125  Q
    | ||||| || |||||||    
T  2015171 gttgtttgtccaaccatg 2015188  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 1965019 - 1964893
Alignment:
Q  11 tgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgct 110  Q
    |||||||||||||| || || | ||| |||| | |||||||||| |||||||||| ||||||||| || ||||| |||| ||||||||||||||  || |    
T  1965019 tgattactcaattctaaccccagagccagctgaacaatttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaactgaacaagattgtt 1964920  T
Q  111 gtttatctaaccatgtcaaacactcca 137  Q
    |||| |||||||||| || ||||||||    
T  1964919 gtttgtctaaccatgacagacactcca 1964893  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 560699 - 560747
Alignment:
Q  38 agctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaa 86  Q
    ||||||| |||||| |||||||||||||  || ||||||||||||||||    
T  560699 agctcattaatttggtcttgtgaaagtgtgcccccacttccaaaagaaa 560747  T

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Target: chr8; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 2436755 - 2436704
Alignment:
Q  11 tgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaa 62  Q
    ||||||||| |||||| ||| | ||| |||||| ||||||||||||||||||    
T  2436755 tgattactcgattccagaccgaaagccagctcaacaatttgttcttgtgaaa 2436704  T

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Target: scaffold0078 (Bit Score: 49; Significance: 2e-19; HSPs: 4)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 22139 - 22055
Alignment:
Q  16 actcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaa 100  Q
    ||||||||||||||||| |||||||||||  ||||||  ||| |||||||  |||||||||||||||||||||| ||||||||||    
T  22139 actcaattccaaaccaaaagctagctcattgatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaactgaa 22055  T

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Target: scaffold0078; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 2885 - 2805
Alignment:
Q  16 actcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaac 96  Q
    ||||||||||||||||| |||||| ||||  || |||  |||||||||||  |||||||||||||||||||||| ||||||    
T  2885 actcaattccaaaccaaaagctagttcattcatctgtctttgtgaaagtgttccaccacttccaaaagaaacatacaaaac 2805  T

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Target: scaffold0078; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 57428 - 57348
Alignment:
Q  16 actcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaac 96  Q
    ||||||||||||||||| |||||| ||||  ||||||  ||| |||||||  |||||||||||||||||||||| ||||||    
T  57428 actcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaac 57348  T

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Target: scaffold0078; HSP #4
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 60972 - 60904
Alignment:
Q  20 aattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaaca 88  Q
    |||||||| |||| ||||| ||||| || ||||||||| |||||||  |||||||||||||| ||||||    
T  60972 aattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaaca 60904  T

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Target: scaffold0184 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 15416 - 15496
Alignment:
Q  16 actcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaac 96  Q
    ||||||||||||||||| |||||| ||||  ||||||  ||| |||||||  |||||||||||||||||||||| ||||||    
T  15416 actcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaac 15496  T

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Target: scaffold0184; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11872 - 11940
Alignment:
Q  20 aattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaaca 88  Q
    |||||||| |||| ||||| ||||| || ||||||||| |||||||  |||||||||||||| ||||||    
T  11872 aattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaaca 11940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 16566542 - 16566461
Alignment:
Q  15 tactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaac 96  Q
    ||||||||||||||||||  ||||| |||| ||| |||  ||| |||||||  ||| |||||||||||||||||| ||||||    
T  16566542 tactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgttccaacacttccaaaagaaacatacaaaac 16566461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 16599120 - 16599201
Alignment:
Q  15 tactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaac 96  Q
    ||||||||||||||||||  ||||| |||| ||| |||  ||| |||||||  ||| |||||||||||||||||| ||||||    
T  16599120 tactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgttccaacacttccaaaagaaacatacaaaac 16599201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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