View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_high_11 (Length: 362)
Name: NF5554_high_11
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 8930748 - 8930427
Alignment:
| Q |
1 |
tatttatctgatcttatcagctacctgactgtatttttaacttgtctggtcactttcatcaaagtttacgcactgccaatttgctatatagggtgatgcc |
100 |
Q |
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| T |
8930748 |
tatttatcttatcttatcagctacctgactgtatttttaacttgtctggtcactttcatcaaagtttacgcactgccaatttgctatatagggtgatgcc |
8930649 |
T |
|
| Q |
101 |
ctttgacccaaaaagtgatcaatatttattcgataatgcaaatatggctgtagcttttggtattacgtagattcatcaaaattacgatgagccacaacgt |
200 |
Q |
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| T |
8930648 |
ctttgacccaaaaagtgatcaatatttattcgataatgcaaatatggctgtagcttttggt---------attcgtcaaaattacgatgagccacaacgt |
8930558 |
T |
|
| Q |
201 |
gtatcttttgtaaacttatggtagctcaccgtaatttcaacaaacccacgatgcattcagatttgtcgtattaattaaaaccacaatttcataaataaac |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8930557 |
gtatcttttgtaaaaatatggtagctcaccgtaatttcaacaaacccacgatgcattcagatttgtcgtattaattaaaaccacaatttcataaataaac |
8930458 |
T |
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| Q |
301 |
aaaaaatgcaatttctgtattgttcttgagt |
331 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
8930457 |
aaaaaacgcaatttctgtattgttcttgagt |
8930427 |
T |
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