View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_high_13 (Length: 355)
Name: NF5554_high_13
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 18572985 - 18573094
Alignment:
| Q |
1 |
tcgaccggggacatgttaaaagagcatgcaatgaatcttcactagcatcactgcacataacacactcataaggctctgtattttcctaagaacatatttc |
100 |
Q |
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| T |
18572985 |
tcgaccgggaacatgttaaaagagcatgcaatgaatcttcactagcatcactgcacataacacactcataaggctctgtattttccaaagaacatatttc |
18573084 |
T |
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| Q |
101 |
ttcagggaaa |
110 |
Q |
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| T |
18573085 |
ttcagggaaa |
18573094 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 18573146 - 18573212
Alignment:
| Q |
273 |
agaggctcatttttatagattaaggaaccattcaataatccttatatttacagaaatatattttcat |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18573146 |
agaggctcatttttatagattaaggaaccattcaataatccttatatttacagaaatatcttttcat |
18573212 |
T |
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