View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_high_17 (Length: 302)
Name: NF5554_high_17
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 44 - 285
Target Start/End: Original strand, 9079489 - 9079727
Alignment:
| Q |
44 |
attctatcacaattgatgaatttgaatttataactgataacgaataagataactgataacagataaaagtgtacctgatccatcatcttgtgtttgagta |
143 |
Q |
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| T |
9079489 |
attctatcgcaatgaatgaatttgaatttataactga---cgaataatataatcgataacagataagattgtacctgatccatcatattgtgtttgagta |
9079585 |
T |
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| Q |
144 |
catgattacgatcaagaattttgatggcaacatattctccattttgaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcc |
243 |
Q |
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| T |
9079586 |
catgattacgatcaagaattttgatggcaacataatctccattttcaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcc |
9079685 |
T |
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| Q |
244 |
cagctcatacttccctactctagtacgaggtgcttgtgttac |
285 |
Q |
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| T |
9079686 |
cagctcatacttccctactctagtacgtggtgcttgtgttac |
9079727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 44 - 274
Target Start/End: Original strand, 9088266 - 9088493
Alignment:
| Q |
44 |
attctatcacaattgatgaatttgaatttataactgataacgaataagataactgataacagataaaagtgtacctgatccatcatcttgtgtttgagta |
143 |
Q |
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| T |
9088266 |
attctatcgcaatgaatgaatttgaatttataactga---cgaataatataatcgataacagataagattgtacctgatccatcatattgtgtttgagta |
9088362 |
T |
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| Q |
144 |
catgattacgatcaagaattttgatggcaacatattctccattttgaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcc |
243 |
Q |
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| T |
9088363 |
catgattacgatcaagaattttgatggcaacataatctccattttcaacattcttagccaacttcaccttagcaaaacttccttcaccaattgtttttcc |
9088462 |
T |
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| Q |
244 |
cagctcatacttccctactctagtacgaggt |
274 |
Q |
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| T |
9088463 |
catctcgtacttcccaactctagtacgaggt |
9088493 |
T |
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