View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5554_high_19 (Length: 294)
Name: NF5554_high_19
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 40008519 - 40008245
Alignment:
| Q |
1 |
tgttacagaaataggttatacataagatcttatgataaatgcttatagcgtaagtgcttaattaagttgtttattccatcagggctaagtatccattcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40008519 |
tgttacagaaataggttatacataagctcttatgataaatggttatagcgcaagtgcttaattaagttgtttattcaatcagggctaagtatccattcct |
40008420 |
T |
|
| Q |
101 |
accagttggctgtaggagtctaatagctttttcccatattaaatgttcttttcatccaagtcaaagtttctcatggttgaatcttttactaagcaataat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40008419 |
accagttggctgtaggagtctaatagctttttcccatattaaatgttcttttcatccaagtcaaagtttctcattgttgaatcttttactaagcaataat |
40008320 |
T |
|
| Q |
201 |
atgttttctatataagaaaaaatccactagaatatagatgcacaattttatttgttatctgcattgaacccttct |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40008319 |
atgttttctatataagaaaaaatccactagaatatagatgcacaattttatttgttatctgcattgaacccttct |
40008245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 8062246 - 8062208
Alignment:
| Q |
31 |
tatgataaatgcttatagcgtaagtgcttaattaagttg |
69 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
8062246 |
tatgataaacgcttatagtgtaagtgcttaattaagttg |
8062208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University