View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_high_22 (Length: 254)
Name: NF5554_high_22
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 32812184 - 32811947
Alignment:
| Q |
1 |
tggcatgttagcagccaatgcagcaaggttgtctaagaatattttgaggctatgcccatcaatggctgcatggcttcttgtgatgccaaatgcgaaacca |
100 |
Q |
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| T |
32812184 |
tggcatgttagcagccaatgcagcaaggttgtctaagaatattttgaggctatgcccatcaatggctgcatggcttcttgtgatgccaaatgcgaaacca |
32812085 |
T |
|
| Q |
101 |
ccacacttgaaggatgttacctatcaaagcaaatcagtaataacattagtttctagtgtataactaatgttaatttgaatcaattaatacattattgaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| |
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| T |
32812084 |
ccacacttgaaggatgttacctatcaaagcaaatcagtaataacattagtttctagtatataactaaagttaatttgaatcaattaatacatta---aat |
32811988 |
T |
|
| Q |
201 |
atattttcgtttcaaccagggaatttaatatctatctatttt |
242 |
Q |
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| T |
32811987 |
atattttcgtttcaaccaggg-attttatatctatctatttt |
32811947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 32829714 - 32829599
Alignment:
| Q |
4 |
catgttagcagccaatgcagcaaggttgtctaagaatattttgaggctatgcccatcaatggctgcatggcttcttgtgatgccaaatgcgaaaccacca |
103 |
Q |
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|||||| | |||||||| |||||||||||||||||| |||||| |||| | ||||||| || | |||||||| |||||| ||| | |||||||||||| |
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| T |
32829714 |
catgttggtagccaatgaagcaaggttgtctaagaaatttttgaagctaagtccatcaaaggttacatggcttgttgtgaagcctatagcgaaaccacca |
32829615 |
T |
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| Q |
104 |
cacttgaaggatgtta |
119 |
Q |
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|||||||||||||||| |
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| T |
32829614 |
cacttgaaggatgtta |
32829599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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