View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_high_26 (Length: 236)
Name: NF5554_high_26
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12452834 - 12453059
Alignment:
| Q |
1 |
ttggaatttggaaattataccaaagcgtatttttatttcaacatgcaagaa---tatttgattttaataagctttctttgtctagtttcatgctccatga |
97 |
Q |
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| T |
12452834 |
ttggaatttggaaattataccaaagcgtatttttatttcaatatgcaagaagaatatttgattttaataagctttctttgtctagtctcatgctccatga |
12452933 |
T |
|
| Q |
98 |
actaaggtaatgttgtgacaaccccccatccttagct-gatcaaatgtagtactgatggttctcctaagggttgtgcaagccctgcaatttgtggtggga |
196 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12452934 |
actaaggtaatgttgtgacaaccccccatccttagctagatcaaatgtagtactgatggttctcctaagggttgtgcaagccctgcaatttgtggtggga |
12453033 |
T |
|
| Q |
197 |
tttttagggataaagatgttaactat |
222 |
Q |
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|||||||||||||||||||||||||| |
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| T |
12453034 |
tttttagggataaagatgttaactat |
12453059 |
T |
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