View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_high_28 (Length: 212)
Name: NF5554_high_28
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_high_28 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 45655271 - 45655490
Alignment:
| Q |
1 |
ctagtcgatcctgagcaatattattatcatgtgactatgtgatttttctttggaagaaacttttctcacctccaaatcacttggaatggatggatgggtg |
100 |
Q |
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| T |
45655271 |
ctagtcgatcctgagcaatattattatcatgtgactatgtgatttttctttggaagaaacttttctcacctccaaatcacttggaatggatggatgggtg |
45655370 |
T |
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| Q |
101 |
tatatcccaaaaaataaaatagtttgtgttgttggaatgtgtataaatcaagag--------ttttatttatttatacaaatgcgtatttttaaaatcat |
192 |
Q |
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| T |
45655371 |
tatatcccaaaaaataaaacagtttgtgttgttggaatgtgtataaatcaagagttttttttttttttttttttatacaaatgcgtatttttaaaatcat |
45655470 |
T |
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| Q |
193 |
gtgtattctttttcagatat |
212 |
Q |
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|||||||||||||||||||| |
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| T |
45655471 |
gtgtattctttttcagatat |
45655490 |
T |
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