View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5554_high_3 (Length: 620)
Name: NF5554_high_3
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Complemental strand, 28111345 - 28110915
Alignment:
| Q |
14 |
cagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtctaggaataa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111345 |
cagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtctaggaataa |
28111246 |
T |
|
| Q |
114 |
gaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111245 |
gaagattcagaaggggtatcggataatccggcacgcagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtatt |
28111146 |
T |
|
| Q |
214 |
gacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111145 |
gacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccac |
28111046 |
T |
|
| Q |
314 |
aagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatga |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111045 |
aagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatga |
28110946 |
T |
|
| Q |
414 |
cagcctcattgctgtcctgcttctttgcacc |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
28110945 |
cagcctcattgctgtcctgcttctttgcacc |
28110915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 445 - 614
Target Start/End: Complemental strand, 40383213 - 40383045
Alignment:
| Q |
445 |
agacggagagagtatttgatacatttatatattcnnnnnnntaaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40383213 |
agacggagagagtatttgatacatttatatattcaaaaaaataaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
40383114 |
T |
|
| Q |
545 |
caaagatgcttcctatattagtgataacttgaattattaaaccataaacagacgatactccctatgctac |
614 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
40383113 |
-aaagatgcttcctatgttagtgataacttgaattattaaactataaacagatgatactccctatgctac |
40383045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 33131653 - 33131359
Alignment:
| Q |
17 |
tttggaccaagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtctaggaataagaa |
116 |
Q |
| |
|
||||||| || |||||| |||||| ||||| | ||| ||||||||||||| || || ||| |||| |||||||| |||| | | ||||||||||||| |
|
|
| T |
33131653 |
tttggactaatcttctgagatggcttggttttgactatcatccaccaccggatcttttctatcattggcagtggtggaatgactcggctaggaataagaa |
33131554 |
T |
|
| Q |
117 |
gattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtattgac |
216 |
Q |
| |
|
| || |||||| |||||||| || ||||| | ||| ||||||| ||||||| | |||||||||| ||||| ||||| || ||| | ||| |||| |
|
|
| T |
33131553 |
ggttaggaagggttatcggattatttggcatgcggcggtttggactatctggaaaattagaaatgattttatctttaataactctgtctgcggtgttgat |
33131454 |
T |
|
| Q |
217 |
gacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatcc |
311 |
Q |
| |
|
|| ||||||||| |||||||||||||| ||| ||||||| |||||||| ||||| |||||||||||||| | | | |||||||| |||||||| |
|
|
| T |
33131453 |
gaagtggtggaggcaattaaggtgttagcttggcggtgggtattgagtcgcttgaatttgccggtttgtttatttaaagaatggacatggaatcc |
33131359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 81 - 338
Target Start/End: Complemental strand, 21867543 - 21867286
Alignment:
| Q |
81 |
ttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaat |
180 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| |||||||| | || |||||||| || ||| ||||||||||| |
|
|
| T |
21867543 |
ttggaagtggtggaatgagttgtcggggaataagaagattcgtaaggggtactggattatctggcatgcggctatttggacaatttggcgagttagaaat |
21867444 |
T |
|
| Q |
181 |
gactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccgg |
280 |
Q |
| |
|
||||| ||||| || || ||| ||| || ||| | || |||| |||| ||| ||||||||||| ||||||| ||| ||| ||||| || ||||||| |
|
|
| T |
21867443 |
gacttgattttcaataactcttcttgtgcgattaaagaagtggtcgaggctatcaaggtgttagcttggaggtaggtgctgaaccgtttaaacttgccgg |
21867344 |
T |
|
| Q |
281 |
tttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtg |
338 |
Q |
| |
|
||| ||| || |||||||| ||||| || |||| ||| || ||||||||||||| |
|
|
| T |
21867343 |
cgtgtatgttctacgaatggacttggaacccgcaagactgtctgctgcggtaatggtg |
21867286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 81 - 338
Target Start/End: Complemental strand, 21923404 - 21923147
Alignment:
| Q |
81 |
ttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaat |
180 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| |||||||| | || |||||||| || ||| ||||||||||| |
|
|
| T |
21923404 |
ttggaagtggtggaatgagttgtcggggaataagaagattcgtaaggggtactggattatctggcatgcggctatttggacaatttggcgagttagaaat |
21923305 |
T |
|
| Q |
181 |
gactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccgg |
280 |
Q |
| |
|
||||| ||||| || || ||| ||| || ||| | || |||| |||| ||| ||||||||||| ||||||| ||| ||| ||||| || ||||||| |
|
|
| T |
21923304 |
gacttgattttcaataactcttcttgtgcgattaaagaagtggtcgaggctatcaaggtgttagcttggaggtaggtgctgaaccgtttaaacttgccgg |
21923205 |
T |
|
| Q |
281 |
tttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtg |
338 |
Q |
| |
|
||| ||| || |||||||| ||||| || |||| ||| || ||||||||||||| |
|
|
| T |
21923204 |
cgtgtatgttctacgaatggacttggaacccgcaagactgtctgctgcggtaatggtg |
21923147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 15559086 - 15559158
Alignment:
| Q |
187 |
atttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttt |
259 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
15559086 |
atttttaataattctccttttggcattgacgagatggtggaggacattaagttgttagcgtggaggtgggttt |
15559158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Original strand, 24836904 - 24837334
Alignment:
| Q |
14 |
cagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtctaggaataa |
113 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24836904 |
cagtttggaccaagcttctgtcatggatcggtttcaattattatcgaccaccggacctgtttcatctttggaagtggtgggatgagttgtctaggaataa |
24837003 |
T |
|
| Q |
114 |
gaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837004 |
gaagattcagaaggggtatcggataatctggcacgcagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtatt |
24837103 |
T |
|
| Q |
214 |
gacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837104 |
gacgacatggtggaggatattaaggtgttagcttggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccac |
24837203 |
T |
|
| Q |
314 |
aagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatga |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837204 |
aagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatga |
24837303 |
T |
|
| Q |
414 |
cagcctcattgctgtcctgcttctttgcacc |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24837304 |
cagcctcattgctgtcctgcttctttgcacc |
24837334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 30871450 - 30871518
Alignment:
| Q |
358 |
tgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgct |
426 |
Q |
| |
|
|||||| ||||||| | ||||||||||| | |||||||||| | ||| |||||||||||||| ||||| |
|
|
| T |
30871450 |
tgggcggtgaggctgttgtatgctgctgttttgctgttttgacagggaatatatgacagcctcgttgct |
30871518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 14 - 444
Target Start/End: Original strand, 34326129 - 34326558
Alignment:
| Q |
14 |
cagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtctaggaataa |
113 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||| | |||| |||||||| ||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
34326129 |
cagtttgaaccaagcttctgtcgtggctcggtttcaattttcatccgccaccggatttgtttcatctttggaagtggttggatgagttgtcaaggaataa |
34326228 |
T |
|
| Q |
114 |
gaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtatt |
213 |
Q |
| |
|
||||||| |||||| |||||||| || |||||| | ||| ||||||| || |||||||||||||||||||| ||||| || |||||||||||| | ||| |
|
|
| T |
34326229 |
gaagatttggaagggttatcggattatttggcacgccgcggtttggactatttggagagttagaaatgacttcattttcaacaattctccttttcgcatt |
34326328 |
T |
|
| Q |
214 |
gacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccac |
313 |
Q |
| |
|
|| || ||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||||| |||||||||| |
|
|
| T |
34326329 |
gatgagatggtggaggacattaaggtgttagcatggaggtgggttttgagccgcttgaa-ttgccggtttgtttgtactacaaatggacttggaatccac |
34326427 |
T |
|
| Q |
314 |
aagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatga |
413 |
Q |
| |
|
||| |||| ||||||||||||||||| |||| ||| || ||| |||| | || |||||||||||||||||| |||| | ||| |||||||||||||||| |
|
|
| T |
34326428 |
aagagtgtctggtgcggtaatggtggtttttggggtctgttacgtgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatga |
34326527 |
T |
|
| Q |
414 |
cagcctcattgctgtcctgcttctttgcacc |
444 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
34326528 |
cagcctcgctgctgtcctgcttctttgcacc |
34326558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 235 - 444
Target Start/End: Original strand, 4028425 - 4028634
Alignment:
| Q |
235 |
aaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaat |
334 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| |||||||| |||| |||| |||||||||||| |
|
|
| T |
4028425 |
aaggtgttagcatggagatgggttttgagccgcttgaatttgccggtttgtttgtactacgaatggacttggaatccgcaagagtgtctggtgcggtaat |
4028524 |
T |
|
| Q |
335 |
ggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgct |
434 |
Q |
| |
|
||||| |||| ||| || ||| ||| | || |||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
4028525 |
ggtggtttttggggtctgttatgcgggtgctgcggctttggtatgctgctgttctgcttttttggctaggagtatatgacggcctcactgctgtcctgct |
4028624 |
T |
|
| Q |
435 |
tctttgcacc |
444 |
Q |
| |
|
|||||||||| |
|
|
| T |
4028625 |
tctttgcacc |
4028634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 35052375 - 35052330
Alignment:
| Q |
389 |
tgctgttttggctaggagtatatgacagcctcattgctgtcctgct |
434 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
35052375 |
tgctgttttggctacgagtatatgacagcctcattgttgtcctgct |
35052330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 585
Target Start/End: Complemental strand, 22793064 - 22793016
Alignment:
| Q |
535 |
tgctaaataacaaagatgcttcctatattagtgataacttgaattattaaa |
585 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
22793064 |
tgctaaataacaaagatgcttcctatgtt--tgaaaacttgaattattaaa |
22793016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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