View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5554_high_4 (Length: 571)
Name: NF5554_high_4
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_high_4 |
 | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0045 (2 HSPs) |
| | |
|
| [»] scaffold1361 (1 HSPs) |
| | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 23 - 431
Target Start/End: Original strand, 3052594 - 3052997
Alignment:
| Q |
23 |
aatcttcacccttagtttgttgaaccgccaccgttaaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcg |
122 |
Q |
| |
|
||||| ||||| |||||||||||||||||| |||||||||||||||| |||| |||| |||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
3052594 |
aatctccacccatagtttgttgaaccgccattgttaaaatgccacctcaaagataaaaagaaagaagtttgcaagatatggagatggaagaaatgtggcg |
3052693 |
T |
|
| Q |
123 |
acaaattcaactgctccagacgactgtcaatgcccaacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactct |
222 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| |
|
|
| T |
3052694 |
acaaattcaactgctccagaagactgtcaatgcccaacaatcattattggaagcacaacgac---gag--gatgatgatgatggctccagtagtgactct |
3052788 |
T |
|
| Q |
223 |
tcatcatctagaagcagacactcacatcgacgccaacttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagt |
322 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |
|
|
| T |
3052789 |
tcatcatttagaagcagacgctcacatcgacgccaacttcggatgaatgatatcaaagtagacatttcaaattttgaagggaaactacatcctgatgagt |
3052888 |
T |
|
| Q |
323 |
ttgtggattggctacaaactgttgaacgagtatttgagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgc |
422 |
Q |
| |
|
||||||||| | |||||||||||||||| || ||||||||||||||||||| ||| ||||||||||| ||||| ||||| |||||||| ||||||||||| |
|
|
| T |
3052889 |
ttgtggattagttacaaactgttgaacgtgtgtttgagtataaggaggttctagaagagcaaaaagtgaagatcgttgctgccaagctgaagaaacatgc |
3052988 |
T |
|
| Q |
423 |
tttaatttg |
431 |
Q |
| |
|
||||||||| |
|
|
| T |
3052989 |
tttaatttg |
3052997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 106 - 431
Target Start/End: Original strand, 3933184 - 3933506
Alignment:
| Q |
106 |
atggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgcccaacaagcattattggaagcacaacgactaagagctgatgatgatgatg |
205 |
Q |
| |
|
|||||||||||| |||||||||||||| | || ||| ||||||||||| ||||||| | |||||| ||||||| | | |||| ||||||||||| |
|
|
| T |
3933184 |
atggaagaaatgaggcgacaaattcaattactacaggagactgtcaatgtccaacaaaccttattgaaagcacaccaaagaaga---tttgatgatgatg |
3933280 |
T |
|
| Q |
206 |
gctccggtagtgactcttcatcatctagaagcagacactcacatcgacg-ccaacttcagatgaatgatatcaaagtagacatttcagattttgaaggga |
304 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| | |||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3933281 |
gctccagtagtgactcttcatcttctagaagcagtcgctcacaccgacgtaaaacttc-gatgaatgatatcaaagtagacattccagattttgaaggga |
3933379 |
T |
|
| Q |
305 |
agctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataaggaggttccagaggagcaaaaagtaaagattgttgcagc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||||| |||||||| ||||| | |
|
|
| T |
3933380 |
agctacaacctgatgagtttgtggattggctacaaactgttgaacgcgtatttgagtacaaggagattccagatgagcaaaaggtaaagatcgttgctgt |
3933479 |
T |
|
| Q |
405 |
caagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
|||||| ||||||||||||| |||||| |
|
|
| T |
3933480 |
caagcttaagaaacatgcttcaatttg |
3933506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 35 - 431
Target Start/End: Complemental strand, 42680553 - 42680166
Alignment:
| Q |
35 |
tagtttgttgaaccgccaccgttaaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaact |
134 |
Q |
| |
|
||||||||||||||| || ||| |||||||||||||||||||||| |||| ||||| ||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
42680553 |
tagtttgttgaaccgtcatcgtccaaatgccacctcgaagacaaaatgaaataagtttgcaagagatggaaa------aaatgaggcgacaaattcaaca |
42680460 |
T |
|
| Q |
135 |
gctccagacgactgtcaatgcccaacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctaga |
234 |
Q |
| |
|
|| || || |||||||||||||||||| | ||||||||||||| | ||||| | | | ||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
42680459 |
actacaagagattgtcaatgcccaacaagcccttttggaagcacaacaa--aagagatt-taaagatcatgtctccggtagtgactcttcatcatctaga |
42680363 |
T |
|
| Q |
235 |
agcagacactcacatcgacgccaacttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggc |
334 |
Q |
| |
|
||||| | |||||| ||||| | ||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||| ||| | ||||||| |
|
|
| T |
42680362 |
agcagtcgctcacaacgacgtgagcttcatatgaatgatattaaagtagacattccagattttgaagggaatctacaaccagatgattttcttgattggc |
42680263 |
T |
|
| Q |
335 |
tacaaactgttgaacgagtatttgagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
|||||| ||| ||||| ||||| | |||||||||||||| ||||||||||| |||||||| ||||| |||||||| ||||||| |||| |||||| |
|
|
| T |
42680262 |
tacaaattgtggaacgtttatttaaatataaggaggttccggaggagcaaaaggtaaagatcgttgctgccaagctgaagaaactcgcttcaatttg |
42680166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 58 - 431
Target Start/End: Complemental strand, 8733172 - 8732802
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || || || || ||||||||||||||| |||||||||||||||| || || ||||||||| | || |
|
|
| T |
8733172 |
aaaatgccacctagaagacaaaacgaaagatcttttcatgaaattgagatggaagaaatgaggcgacaaattcaactactataggagactgtcaaagtcc |
8733073 |
T |
|
| Q |
158 |
aacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgcca |
257 |
Q |
| |
|
||||||| |||||||||| | | | | |||| ||||||||||| ||| ||||| ||||||||||||||||||||||| | || ||| | | | || |
|
|
| T |
8733072 |
aacaagccttattggaagaaaaccaaagaagatttgatgatgatg---gctttggtagagactcttcatcatctagaagcagtcgcttacaccaatgtca |
8732976 |
T |
|
| Q |
258 |
acttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtattt |
357 |
Q |
| |
|
|| || |||||| ||||||| || |||||| ||||||| ||||| | || ||||| ||||||||||| |||||||| || || ||||||| |||||| |
|
|
| T |
8732975 |
acctcggatgaagcatatcaaggtcgacattccagatttcgaaggagaactgcaaccagatgagtttgttgattggctccaggctattgaacgcgtattt |
8732876 |
T |
|
| Q |
358 |
gagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||| |||||| | ||||||||||| || |||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
8732875 |
gagtacaaggagataccagaggagcacaaggtaaagattgttatagtaaagctaaagaaacatgctttaatttg |
8732802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 58 - 431
Target Start/End: Original strand, 19787289 - 19787659
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
||||| |||||| ||||||||||||||||| || || || || ||||||||||||||| |||||||||||||||| || ||| ||||||||| | || |
|
|
| T |
19787289 |
aaaataccacctagaagacaaaacgaaagatcttttcatgaaattgagatggaagaaatgaggcgacaaattcaactactacaggagactgtcaaagtcc |
19787388 |
T |
|
| Q |
158 |
aacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgcca |
257 |
Q |
| |
|
||||||| |||||||||| | | | | |||| ||||||||||| ||| |||||| ||||||||||||||||||||||| | || ||| | | | || |
|
|
| T |
19787389 |
aacaagccttattggaagaaaaccaaagaagatttgatgatgatg---gcttcggtagagactcttcatcatctagaagcagtcgcttacaccaatgtca |
19787485 |
T |
|
| Q |
258 |
acttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtattt |
357 |
Q |
| |
|
|| || |||||| ||||||| || |||||| ||||||| ||||| | || ||||| |||||||||| |||||||| || || ||||||| |||||| |
|
|
| T |
19787486 |
acctcggatgaagcatatcaaggtcgacattccagatttcgaaggagaactgcaaccaaatgagtttgttgattggctccaggctattgaacgcgtattt |
19787585 |
T |
|
| Q |
358 |
gagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||| |||||| | ||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19787586 |
gagtacaaggagataccagaagagcacaaggtaaagattgttgcattaaagctaaagaaacatgctttaatttg |
19787659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 58 - 431
Target Start/End: Complemental strand, 21768864 - 21768497
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
|||||||||| | ||| ||||||||||| | || ||||| || |||||||||||||| | |||||| ||||||| | |||| ||||||||| |||| |
|
|
| T |
21768864 |
aaaatgccacatagaaaacaaaacgaaatatctttgcaagaaattgagatggaagaaattagtcgacaagttcaactacagcagaagactgtcaacgccc |
21768765 |
T |
|
| Q |
158 |
aacaagcattatt--ggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgc |
255 |
Q |
| |
|
||||| ||||||| ||||||| |||| ||||| ||||||| |||||||||||||||||||| ||||||||||| | |||||||||| | |
|
|
| T |
21768764 |
aacaaccattattttggaagcatgacgaagaagagt--------atgatggttccggtagtgactcttcatcgtctagaagcagtcgctcacatcgatgt |
21768673 |
T |
|
| Q |
256 |
caacttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtat |
355 |
Q |
| |
|
| ||| ||||||||||||||| |||||||| || |||||| |||||||||||||| ||||||||||| |||||||| ||| ||||| | |||| |
|
|
| T |
21768672 |
ctgattcgaatgaatgatatcaaaatagacattcaagcttttgatgggaagctacaaccagatgagtttgttgattggctctcgactattgaaagtgtat |
21768573 |
T |
|
| Q |
356 |
ttgagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||||| |||||| | ||| |||| || || ||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
21768572 |
ttgagtacaaggagataccataggaacacaaggtaaagattgttgtatttaagctaaagaaacatgctttaatttg |
21768497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 58 - 431
Target Start/End: Complemental strand, 16534814 - 16534444
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| || || || || |||||||||||||| |||||||||||||||| || ||| ||||||||| | || |
|
|
| T |
16534814 |
aaaatgccacctagaagaaaaaacgaaagatcttttcatgaaatttagatggaagaaatgaggcgacaaattcaactactacaggagactgtcaaagtcc |
16534715 |
T |
|
| Q |
158 |
aacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgcca |
257 |
Q |
| |
|
||||| | |||||||||||| ||| | |||| |||||||||||||| ||||| ||||||||||||||||||||||| || ||| | | | | |
|
|
| T |
16534714 |
aacaaaccttattggaagca-aacca--aagaatatttgatgatgatggctttggtagagactcttcatcatctagaagcagttgcttacaccaatgtcc |
16534618 |
T |
|
| Q |
258 |
acttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtattt |
357 |
Q |
| |
|
|| || |||||| ||||||| || |||||| ||||||| ||||| | || ||||| ||||||||||| |||||||| | || ||||| | |||||| |
|
|
| T |
16534617 |
acctcggatgaagcatatcaaggtcgacattccagatttcgaaggagaactgcaaccagatgagtttgttgattggctctaggctattgaatgcgtattt |
16534518 |
T |
|
| Q |
358 |
gagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||| |||||| | |||||||||| || |||||||||| || || ||| |||||||||||||||||||||| |
|
|
| T |
16534517 |
gagtacaaggagatatcagaggagcacaaggtaaagattggtgtagtaaagataaagaaacatgctttaatttg |
16534444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 58 - 431
Target Start/End: Original strand, 16630848 - 16631218
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| || || || || |||||||||||||| |||||||||||||||| || ||| ||||||||| | || |
|
|
| T |
16630848 |
aaaatgccacctagaagaaaaaacgaaagatcttttcatgaaatttagatggaagaaatgaggcgacaaattcaactactacaggagactgtcaaagtcc |
16630947 |
T |
|
| Q |
158 |
aacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgcca |
257 |
Q |
| |
|
||||| | |||||||||||| ||| | |||| |||||||||||||| ||||| ||||||||||||||||||||||| || ||| | | | | |
|
|
| T |
16630948 |
aacaaaccttattggaagca-aacca--aagaatatttgatgatgatggctttggtagagactcttcatcatctagaagcagttgcttacaccaatgtcc |
16631044 |
T |
|
| Q |
258 |
acttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtattt |
357 |
Q |
| |
|
|| || |||||| ||||||| || |||||| ||||||| ||||| | || ||||| ||||||||||| |||||||| | || ||||| | |||||| |
|
|
| T |
16631045 |
acctcggatgaagcatatcaaggtcgacattccagatttcgaaggagaactgcaaccagatgagtttgttgattggctctaggctattgaatgcgtattt |
16631144 |
T |
|
| Q |
358 |
gagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||| |||||| | |||||||||| || |||||||||| || || ||| |||||||||||||||||||||| |
|
|
| T |
16631145 |
gagtacaaggagatatcagaggagcacaaggtaaagattggtgtagtaaagataaagaaacatgctttaatttg |
16631218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 476 - 552
Target Start/End: Complemental strand, 8365661 - 8365585
Alignment:
| Q |
476 |
cctagtaaagcagtggttaccttatacctggtttattctattgaactgtttctatgaaattttgatcgaggtacctg |
552 |
Q |
| |
|
|||||| |||||| |||||||| ||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
8365661 |
cctagttaagcagcggttacctcatacctggtttgttctgttgaactgtttctatgagattttaatcgaggtacctg |
8365585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 476 - 538
Target Start/End: Complemental strand, 8352206 - 8352144
Alignment:
| Q |
476 |
cctagtaaagcagtggttaccttatacctggtttattctattgaactgtttctatgaaatttt |
538 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
8352206 |
cctagttaagcagtggttatctcatacctggtttgttctattgaaccgtttctatgaaatttt |
8352144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 478
Target Start/End: Complemental strand, 8365746 - 8365699
Alignment:
| Q |
431 |
gtggtttgctctttattaatttttatgacattatttttaactccacct |
478 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
8365746 |
gtggtttgctctttcttaatttttacgacattatttttaactccacct |
8365699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 429 - 474
Target Start/End: Complemental strand, 8357322 - 8357277
Alignment:
| Q |
429 |
ttgtggtttgctctttattaatttttatgacattatttttaactcc |
474 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
8357322 |
ttgtggtttgctctttgttaattttcatgacattatttttaactcc |
8357277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 11712392 - 11712483
Alignment:
| Q |
274 |
atcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataa |
365 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| || ||||| || |||||||| || |||||||| |||||||||||| |||| || |||||||| |
|
|
| T |
11712392 |
atcaaggtagatattcctgattttgaaggaaatctacatccagatgagttcgttgattggctccaaactgttgaaagagtcttcgagtataa |
11712483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 13161597 - 13161688
Alignment:
| Q |
274 |
atcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataa |
365 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| || ||||| || |||||||| || |||||||| |||||||||||| |||| || |||||||| |
|
|
| T |
13161597 |
atcaaggtagatattcctgattttgaaggaaaactacatccagatgagttcgttgattggctccaaactgttgaatgagtcttcgagtataa |
13161688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 2e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 58 - 431
Target Start/End: Complemental strand, 18965897 - 18965527
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
||||||||||| || ||||||| ||||| ||| || || || ||||||||||||||| |||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
18965897 |
aaaatgccaccaaaaaaacaaaaccaaagacgtttgcatgaaattgagatggaagaaatgaggcgacaaattcaactactccaggaaactgtcaacgccc |
18965798 |
T |
|
| Q |
158 |
aacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgcca |
257 |
Q |
| |
|
|||||| ||||||||||||| ||| | |||| |||||||||||| ||| ||||||||||||||||| || ||||| || | |||||||||||| || |
|
|
| T |
18965797 |
aacaagtattattggaagcataacaaagaagaaatgatgatgatga---ctctggtagtgactcttcatcttccagaagtagtcgctcacatcgacgtca |
18965701 |
T |
|
| Q |
258 |
acttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtattt |
357 |
Q |
| |
|
| || ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |
|
|
| T |
18965700 |
aactcggatgagtgatatcaaagtagacattccagattttgaagggaagctacaacctgatgagtttgcggattggctacaaactattgaatgagtattt |
18965601 |
T |
|
| Q |
358 |
gagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| | |||||| || ||||| |||| |||||| |
|
|
| T |
18965600 |
gagtataaggaggttccagaggagcaaaaagtaaagatcgttgctgtcaagctgaataaacacgcttcaatttg |
18965527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 58 - 431
Target Start/End: Original strand, 4531373 - 4531743
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || || || || ||||||||||||||| |||||||||||||||| || ||| ||||||||| | || |
|
|
| T |
4531373 |
aaaatgccacctagaagacaaaacgaaagatcttttcatgaaattgagatggaagaaatgaggcgacaaattcaactactacaggagactgtcaaagtcc |
4531472 |
T |
|
| Q |
158 |
aacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgcca |
257 |
Q |
| |
|
||||||| |||||||||||| | | | |||| ||||||||||| ||| ||||| |||||||||||||||||||||| | || ||| | | | || |
|
|
| T |
4531473 |
aacaagccttattggaagcaaaccaaagaagatttgatgatgatg---gctttggtagagactcttcatcatctagaagcactcgcttacaccaatgtca |
4531569 |
T |
|
| Q |
258 |
acttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtattt |
357 |
Q |
| |
|
|| || |||||| ||||||| || |||||| ||||||| ||||| | || ||||| ||||||||||| |||||||| || || ||||||| |||||| |
|
|
| T |
4531570 |
acctcggatgaagcatatcaaggtcgacattccagatttcgaaggagaactgcaaccagatgagtttgttgattggctccaggctattgaacgcgtattt |
4531669 |
T |
|
| Q |
358 |
gagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||| |||||| | ||||||||||| || |||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
4531670 |
gagtacaaggagataccagaggagcacaaggtaaagattgttgcagtaaagttaaagaaacatgctttaatttg |
4531743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 274 - 365
Target Start/End: Complemental strand, 5382369 - 5382278
Alignment:
| Q |
274 |
atcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataa |
365 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| |||||||| || |||||||| || |||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
5382369 |
atcaaggtagatattcctgattttgaaggaaagctacatccagatgagttcgttgattggctccaaactgttgaacgagtcttcgagtataa |
5382278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 274 - 365
Target Start/End: Complemental strand, 13722136 - 13722045
Alignment:
| Q |
274 |
atcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataa |
365 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| |||||||| || |||||||| || |||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
13722136 |
atcaaggtagatattcctgattttgaaggaaagctacatccagatgagttcgttgattggctccaaactgttgaacgagtcttcgagtataa |
13722045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 4e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 58 - 431
Target Start/End: Original strand, 37208323 - 37208693
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
|||||||||||||||||||| || | |||| ||| |||||||||||||||||||||||| ||||||||||||| || || ||| |||||||||| |
|
|
| T |
37208323 |
aaaatgccacctcgaagacagaatgcaagaggtttgcaagagatggagatggaagaaatgaggcgacaaattcaggaactacaagagaccgtcaatgccc |
37208422 |
T |
|
| Q |
158 |
aacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgcca |
257 |
Q |
| |
|
|||| || ||||||||||||||||| ||||| |||| |||||||| | |||||||||||||||| ||||||||||| | || ||||||||| | |
|
|
| T |
37208423 |
aacatgccatattggaagcacaacgaagaagagttgat---gatgatggttttagtagtgactcttcatcttctagaagcagtcgcttacatcgacgtaa |
37208519 |
T |
|
| Q |
258 |
acttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtattt |
357 |
Q |
| |
|
| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37208520 |
aactccgatgaatgatatcaaagtagacattccagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgtgtattt |
37208619 |
T |
|
| Q |
358 |
gagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||||| ||||| | |||||| || ||||| |||| |||||| |
|
|
| T |
37208620 |
gagtacaaggagattccagaggagcaaaaggtaaagatcgttgctgtcaagctgaaaaaacacgcttcaatttg |
37208693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 198 - 431
Target Start/End: Original strand, 15469573 - 15469806
Alignment:
| Q |
198 |
tgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgccaacttcagatgaatgatatcaaagtagacatttcagatttt |
297 |
Q |
| |
|
||||||| |||||||||| ||||||||||| |||||||||| | |||||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15469573 |
tgatgatagctccggtagcgactcttcatcttctagaagcaatcgctcacactgacgtcaacttcagatgaatgatatcaaagtagacattctagatttt |
15469672 |
T |
|
| Q |
298 |
gaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataaggaggttccagaggagcaaaaagtaaagattg |
397 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| ||||||||||||||| | ||||||||||||| |||||||||||||||||||| |||| ||||| |
|
|
| T |
15469673 |
gaagggaagctacaacccaatgagtttatggattagctacaaactgttgaccatctatttgagtataatgaggttccagaggagcaaaatgtaatgattg |
15469772 |
T |
|
| Q |
398 |
ttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||| | |||||||| |||||||||||| |||| |
|
|
| T |
15469773 |
ttgatgttaagctaaataaacatgctttattttg |
15469806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 58 - 335
Target Start/End: Complemental strand, 11851862 - 11851588
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
|||||||||||| ||||| ||||||||| | || || || || ||||||||||||||| |||||||||||||||| || ||| |||| |||| | |
|
|
| T |
11851862 |
aaaatgccacctagaagaaaaaacgaaatatcttttcatgaaattgagatggaagaaatgaggcgacaaattcaactactacaggagactatcaacatca |
11851763 |
T |
|
| Q |
158 |
aacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgcca |
257 |
Q |
| |
|
||||||| |||||||||||| | | | |||| ||||||||| | ||| |||||| ||||||||||||||||||||||| | || ||| | | | || |
|
|
| T |
11851762 |
aacaagccttattggaagcaaaccaaagaagatttgatgatgaag---gcttcggtagagactcttcatcatctagaagcagtcgcttacaccaatgtca |
11851666 |
T |
|
| Q |
258 |
acttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggct |
335 |
Q |
| |
|
|| || |||||| ||||||| || |||||| || |||| ||||| | ||||||| ||||||||||| |||||||| |
|
|
| T |
11851665 |
acctcggatgaagcatatcaaggtcgacattgcatatttcgaaggagaactacaactagatgagtttgttgattggct |
11851588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 103 - 431
Target Start/End: Original strand, 29813 - 30138
Alignment:
| Q |
103 |
gagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgcccaacaagcattattggaagcacaacgactaagagctgatgatgatg |
202 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||||| |||||||| |||||||||||||||||||||||||||||| |||| |||| |||| |
|
|
| T |
29813 |
gagatggaagaaatgaggcgacagattcaactactccaggaaactgtcaacgcccaacaagcattattggaagcacaacgaagaaga---aatgacgatg |
29909 |
T |
|
| Q |
203 |
atggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgccaacttcagatgaatgatatcaaagtagacatttcagattttgaagg |
302 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| || | |||||||||||| ||| | ||||| | | ||||||||||||||| |||||||| |||| |
|
|
| T |
29910 |
atggctccggtagtgactcttcatcttccagaagtagtcgctcacatcgacgtcaaactaggatgagtaaaatcaaagtagacattccagatttttaagg |
30009 |
T |
|
| Q |
303 |
gaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataaggaggttccagaggagcaaaaagtaaagattgttgca |
402 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
30010 |
gaagctacaacctgatgagtttgtagattggctacaaactattgaacgtgtatttaagtataaggaggtagcagaggagcaaaaagtaaagatcgttgct |
30109 |
T |
|
| Q |
403 |
gccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
|||||||| |||||||| |||| |||||| |
|
|
| T |
30110 |
gccaagctgaagaaacacgcttcaatttg |
30138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 58 - 431
Target Start/End: Original strand, 45162606 - 45162976
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
|||||||||||||||||||| || | |||| ||| |||||| ||||||||||||||||| ||||||||||||| || || ||| ||||||| | |
|
|
| T |
45162606 |
aaaatgccacctcgaagacagaatgcaagaggtttgcaagagctggagatggaagaaatgaggcgacaaattcaggaactacaagagaccatcaatgctc |
45162705 |
T |
|
| Q |
158 |
aacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgcca |
257 |
Q |
| |
|
|||| || ||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||| ||||||||||| | |||||| ||||| | |
|
|
| T |
45162706 |
aacaggccatattggaagcacaacgaaggagagttgatgatgatg---gctccagtagtgactcttcatcttctagaagcagtcgctcacaccgacgtaa |
45162802 |
T |
|
| Q |
258 |
a-cttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatt |
356 |
Q |
| |
|
| |||| ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45162803 |
aacttc-gatgaataatatcaaaatagacattccagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgcgtatt |
45162901 |
T |
|
| Q |
357 |
tgagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
|||||| |||||| ||||||| |||||||| ||||||| ||||| | |||||| ||||||||||||| |||||| |
|
|
| T |
45162902 |
tgagtacaaggagattccagaagagcaaaagttaaagatcgttgctgtcaagctgaagaaacatgcttcaatttg |
45162976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 35 - 431
Target Start/End: Complemental strand, 42470429 - 42470042
Alignment:
| Q |
35 |
tagtttgttgaaccgccaccgttaaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaact |
134 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
42470429 |
tagtttgttgaaccttcatcgttaaaatgccacctcgaagacaaaatgaaagaagtctgcaagagatgga------agatatgaggcgacaaattcaaca |
42470336 |
T |
|
| Q |
135 |
gctccagacgactgtcaatgcccaacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctaga |
234 |
Q |
| |
|
|| || || | |||||||||||||| | ||||||||| ||| | ||| || | ||||| | ||| |||||||||||||||||||||| |
|
|
| T |
42470335 |
actacaagagatcattaatgcccaacaagcccttttggaagcagaacaaaggagattcgaaggtgatgtt---tcctatagtgactcttcatcatctaga |
42470239 |
T |
|
| Q |
235 |
agcagacactcacatcgacgccaacttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggc |
334 |
Q |
| |
|
||||| |||||||| ||||| || ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||||| ||| |||||||| |
|
|
| T |
42470238 |
agcagtcactcacaacgacgtcagcttcagatgaatgatattaaagtagacattccagattttgaagggaatctacaactggatgattttctggattggt |
42470139 |
T |
|
| Q |
335 |
tacaaactgttgaacgagtatttgagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
42470138 |
tacaaactattgaacgtgtatttgagtataaggaggttccagaggagcaaaaagtaaagattgttgctgccaagttgaagaaacatgctttaatttg |
42470042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 58 - 431
Target Start/End: Original strand, 13774689 - 13775059
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || || || || ||||||||||||||| |||||||||||||||| || ||| ||||||||| | || |
|
|
| T |
13774689 |
aaaatgccacctagaagacaaaacgaaagatcttttcatgaaattgagatggaagaaatgaggcgacaaattcaactactacaggagactgtcaaagtcc |
13774788 |
T |
|
| Q |
158 |
aacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgcca |
257 |
Q |
| |
|
||||||| |||||||||||| | | | |||| ||||||||||| ||| ||||| |||||||||||||||||||||| | || ||| | | | || |
|
|
| T |
13774789 |
aacaagccttattggaagcaaaccaaagaagatttgatgatgatg---gctttggtagagactcttcatcatctagaagcactcgcttacaccaatgtca |
13774885 |
T |
|
| Q |
258 |
acttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtattt |
357 |
Q |
| |
|
|| || |||||| ||||||| || |||||| ||||||| ||||| | || ||||| ||||||||||| |||||||| || || ||||||| |||||| |
|
|
| T |
13774886 |
acctcggatgaagcatatcaaggtcgacattccagatttcgaaggagaactgcaaccagatgagtttgttgattggctccaggctattgaacgcgtattt |
13774985 |
T |
|
| Q |
358 |
gagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||| |||||| | ||||||||||| || |||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
13774986 |
gagtacaaggagataccagaggagcacaaggtaaagattgttgcagtaaagttaaagaaacatgctttaatttg |
13775059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 198 - 288
Target Start/End: Original strand, 33235960 - 33236050
Alignment:
| Q |
198 |
tgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgccaacttcagatgaatgatatcaaagtagacatt |
288 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| | |||||| ||||| |||||| |||||||||||||||| |||||||| |
|
|
| T |
33235960 |
tgatgatggctatggtagtgactcttcatcatctagaagcattcgctcacaccgacgtcaactttcgatgaatgatatcaaaatagacatt |
33236050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 24907877 - 24907739
Alignment:
| Q |
45 |
aaccgccaccgttaaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacg |
144 |
Q |
| |
|
|||| ||| ||| |||||||||||| ||| |||||| || ||| || || || || ||||||||||||||| |||||||||||||||| || || | |
|
|
| T |
24907877 |
aaccaccatcgtcaaaatgccacctagaaaacaaaatgagagatctttgcatgaaattgagatggaagaaatgaggcgacaaattcaactactacaagag |
24907778 |
T |
|
| Q |
145 |
actgtcaatgcccaacaagcattattggaagcacaacga |
183 |
Q |
| |
|
|| ||||| ||||||| | | |||||||||||||||||| |
|
|
| T |
24907777 |
accgtcaacgcccaacgaaccttattggaagcacaacga |
24907739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 58 - 431
Target Start/End: Complemental strand, 2409665 - 2409295
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
|||||||||||||||| ||| || | |||| ||| |||||||||||||||||||||||| ||||| ||||||| || || |||||||||||||| |
|
|
| T |
2409665 |
aaaatgccacctcgaaaacagaatgcaagaggtttgcaagagatggagatggaagaaatgaggcgataaattcaggaactacaagagactgtcaatgccc |
2409566 |
T |
|
| Q |
158 |
aacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgcca |
257 |
Q |
| |
|
||||||| |||||||||||||| || ||||| ||||||| ||||||||| | |||||||||||||| | ||||||||| | |||||| ||||| | |
|
|
| T |
2409565 |
aacaagccatattggaagcacaatgaagaagagttgatgat---gatggctccagcagtgactcttcatcttttagaagcagtcgctcacaccgacgtaa |
2409469 |
T |
|
| Q |
258 |
acttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtattt |
357 |
Q |
| |
|
| || ||||||||||||||||||||||||| || ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2409468 |
aactccgatgaatgatatcaaagtagacattccatattttgaagggaagctagaatctgatgaatttgtggattggctacaaactgttgaacgtgtattt |
2409369 |
T |
|
| Q |
358 |
gagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||||| |||| | |||||| |||||||| |||| |||||| |
|
|
| T |
2409368 |
gagtacaaggagattccagaggagcaaaaggtaaagatcgttgttgtcaagctgaagaaacaggcttcaatttg |
2409295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 195 - 431
Target Start/End: Original strand, 47398039 - 47398275
Alignment:
| Q |
195 |
tgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgccaacttcagatgaatgatatcaaagtagacatttcagat |
294 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| | | ||| ||||| ||||||| |||||||||||| |||||||||||| ||||| |
|
|
| T |
47398039 |
tgatgatgatggctttggtagtgactcttcatcatctagaagcaatcgtttacaccgacgtcaacttctgatgaatgatatgaaagtagacattccagat |
47398138 |
T |
|
| Q |
295 |
tttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataaggaggttccagaggagcaaaaagtaaaga |
394 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||| ||||||||| | || ||||| ||||| ||||||| |
|
|
| T |
47398139 |
tttgaagggaagctacaacccaataagtttgtggattggctacaaactattgaacatgtatttgactataaggagatacctgaggaacaaaaggtaaaga |
47398238 |
T |
|
| Q |
395 |
ttgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
47398239 |
ttgttgcagtcaagctaaagaaacatggtttaatttg |
47398275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 35 - 431
Target Start/End: Original strand, 10909522 - 10909909
Alignment:
| Q |
35 |
tagtttgttgaaccgccaccgttaaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaact |
134 |
Q |
| |
|
|||||||||||| || || ||| |||||||||||||||||||||| |||||||||| ||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
10909522 |
tagtttgttgaatcgtcatcgtccaaatgccacctcgaagacaaaatgaaagaagtttgcaagagatggaaa------aaatgaggcgacaaattcaaca |
10909615 |
T |
|
| Q |
135 |
gctccagacgactgtcaatgcccaacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctaga |
234 |
Q |
| |
|
|| || || |||||||||||||||||| | ||||||||||||| | ||||| | | ||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
10909616 |
actacaagagattgtcaatgcccaacaagcccttttggaagcacaacaa--aagagattcaaa-gatcatgtctccggtagtgactcttcatcatctaga |
10909712 |
T |
|
| Q |
235 |
agcagacactcacatcgacgccaacttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggc |
334 |
Q |
| |
|
||||| | |||||| ||||| | ||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||| ||| | ||||||| |
|
|
| T |
10909713 |
agcagtcgctcacaacgacgtgagcttcaaatgaatgatattaaagtagacattccagattttgaagggaatctacaaccagatgattttctagattggc |
10909812 |
T |
|
| Q |
335 |
tacaaactgttgaacgagtatttgagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
|||||| ||| ||||| ||||| | |||||||||||||| ||||||||| | |||||||||||||| |||||||| ||||||| |||| |||||| |
|
|
| T |
10909813 |
tacaaattgtggaacgtttatttaaatataaggaggttccggaggagcaacaggtaaagattgttgctgccaagctgaagaaactcgcttcaatttg |
10909909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 274 - 365
Target Start/End: Complemental strand, 14475899 - 14475808
Alignment:
| Q |
274 |
atcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataa |
365 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| |||||||| || |||||||| || |||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
14475899 |
atcaaggtagatattcctgattttgaaggaaagctacatccagatgagttcgttgattggctccaaactgttgaacgagtcttcgagtataa |
14475808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 431
Target Start/End: Original strand, 4819502 - 4819665
Alignment:
| Q |
268 |
aatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataagg |
367 |
Q |
| |
|
||||||||||| |||| |||||||||||| ||||| || | ||||| ||||||||||| || ||||| || || |||||||| |||| |||| || | |
|
|
| T |
4819502 |
aatgatatcaaggtaggcatttcagatttcgaaggaaaaatgcaaccagatgagtttgttgactggcttcagaccgttgaacgcatattatagtacaaag |
4819601 |
T |
|
| Q |
368 |
aggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
|| | || ||||| || ||||||||||| || ||| |||||| | |||||| ||||||||||| |
|
|
| T |
4819602 |
agatacctgaggatcataaagtaaagatcgtcgcactcaagctcaggaaacacgctttaatttg |
4819665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 431
Target Start/End: Original strand, 4831302 - 4831465
Alignment:
| Q |
268 |
aatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataagg |
367 |
Q |
| |
|
||||||||||| |||| |||||||||||| ||||| || | ||||| ||||||||||| || ||||| || || |||||||| |||| |||| || | |
|
|
| T |
4831302 |
aatgatatcaaggtaggcatttcagatttcgaaggaaaaatgcaaccagatgagtttgttgactggcttcagaccgttgaacgcatattatagtacaaag |
4831401 |
T |
|
| Q |
368 |
aggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
|| | || ||||| || ||||||||||| || ||| |||||| | |||||| ||||||||||| |
|
|
| T |
4831402 |
agatacctgaggatcataaagtaaagatcgtcgcactcaagctcaggaaacacgctttaatttg |
4831465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 365
Target Start/End: Original strand, 23202249 - 23202321
Alignment:
| Q |
293 |
attttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataa |
365 |
Q |
| |
|
|||||||||| |||||||| || |||||||| || ||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
23202249 |
attttgaaggaaagctacatccagatgagttcgttgattgactccaaactgttgaacgagtcttcgagtataa |
23202321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 42376410 - 42376501
Alignment:
| Q |
274 |
atcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataa |
365 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| ||| |||| || |||||||| || ||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
42376410 |
atcaaggtagatattcctgattttgaaggaaagttacatccagatgagttcgttgattgtctccaaactgttgaacgagtcttcgagtataa |
42376501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 365
Target Start/End: Complemental strand, 2796155 - 2796058
Alignment:
| Q |
268 |
aatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataa |
365 |
Q |
| |
|
||||| ||||| ||||| ||| | ||||||||||| |||||||| | |||| ||| || |||||||| |||||||||||||| || || |||||||| |
|
|
| T |
2796155 |
aatgacatcaaggtagatattcctgattttgaaggaaagctacatctagatgcgttcgttgattggctccaaactgttgaacgtgtcttcgagtataa |
2796058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 4819296 - 4819371
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaac |
133 |
Q |
| |
|
|||||| ||||||||| |||||| ||||||| || |||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
4819296 |
aaaatgtcacctcgaaaacaaaatgaaagaattttgcaagagataaagatgaaagaaattaggcgacaaattcaac |
4819371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 4831096 - 4831171
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaac |
133 |
Q |
| |
|
|||||| ||||||||| |||||| ||||||| || |||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
4831096 |
aaaatgtcacctcgaaaacaaaatgaaagaattttgcaagagataaagatgaaagaaattaggcgacaaattcaac |
4831171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 153; Significance: 8e-81; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 94 - 431
Target Start/End: Original strand, 88809 - 89143
Alignment:
| Q |
94 |
caagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgcccaacaagcattattggaagcacaacgactaagagctg |
193 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| || || ||| ||||||||||||| || ||||||||||||||||| ||||| || |
|
|
| T |
88809 |
caagagatggagatggaagaaatgaggcgacaaattcaggaactacaagagaccatcaatgcccaacaggccatattggaagcacaacgaagaagagttg |
88908 |
T |
|
| Q |
194 |
atgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgccaa-cttcagatgaatgatatcaaagtagacatttcag |
292 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| ||||||||||| | |||||| ||||| || |||| ||||||| |||||||| |||||||| ||| |
|
|
| T |
88909 |
atgatgatg---gctccagtagtgactcttcatcttctagaagcagtcgctcacaccgacgtaaaacttc-gatgaataatatcaaaatagacattccag |
89004 |
T |
|
| Q |
293 |
attttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataaggaggttccagaggagcaaaaagtaaa |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| |||||||||||||||| ||||| |
|
|
| T |
89005 |
attttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgcatattttagtacaaggagattccagaggagcaaaaggtaaa |
89104 |
T |
|
| Q |
393 |
gattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||| ||||| | |||||| |||||||| |||| |||||| |
|
|
| T |
89105 |
gatcgttgctgtcaagctgaagaaacacgcttcaatttg |
89143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 35 - 431
Target Start/End: Original strand, 4877515 - 4877902
Alignment:
| Q |
35 |
tagtttgttgaaccgccaccgttaaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaact |
134 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
4877515 |
tagtttgttgaaccttcatcgttaaaatgccacctcgaagacaaaatgaaagaagtctgcaagagatgga------agatatgaggcgacaaattcaaca |
4877608 |
T |
|
| Q |
135 |
gctccagacgactgtcaatgcccaacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctaga |
234 |
Q |
| |
|
|| || || | |||||||||||||| | ||||||||| ||| | ||| || | ||||| | ||| |||||||||||||||||||||| |
|
|
| T |
4877609 |
actacaagagatcattaatgcccaacaagcccttttggaagcagaacaaaggagattcgaaggtgatgtt---tcctatagtgactcttcatcatctaga |
4877705 |
T |
|
| Q |
235 |
agcagacactcacatcgacgccaacttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggc |
334 |
Q |
| |
|
||||| |||||||| ||||| || ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||||| ||| |||||||| |
|
|
| T |
4877706 |
agcagtcactcacaacgacgtcagcttcagatgaatgatattaaagtagacattccagattttgaagggaatctacaactggatgattttctggattggt |
4877805 |
T |
|
| Q |
335 |
tacaaactgttgaacgagtatttgagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
4877806 |
tacaaactattgaacgtgtatttgagtataaggaggttccagaggagcaaaaagtaaagattgttgctgccaagttgaagaaacatgctttaatttg |
4877902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 58 - 431
Target Start/End: Complemental strand, 36379238 - 36378871
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
|||||||||||| ||||||| || | |||| ||| |||||||||||||||||||||||| ||||||||||||| || || ||| |||||||||| |
|
|
| T |
36379238 |
aaaatgccaccttgaagacataatgcaagaggtttgcaagagatggagatggaagaaatgaggcgacaaattcaggaactacaagagaccgtcaatgccc |
36379139 |
T |
|
| Q |
158 |
aacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgcca |
257 |
Q |
| |
|
|||| || ||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||| | |||||| ||||| | |
|
|
| T |
36379138 |
aacaggccatattggaagcagaacgaagaagagttgatgatgatg---gctcc---agtgactcttcatcttctagaagcagtcgctcacaccgacgtaa |
36379045 |
T |
|
| Q |
258 |
acttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtattt |
357 |
Q |
| |
|
| || ||||||||||||||| || |||||| ||||||| ||||| | || ||||| ||||||||||| |||||||| || || ||||||| |||||| |
|
|
| T |
36379044 |
aactctgatgaatgatatcaaggtcgacattccagatttcgaaggagaactgcaaccagatgagtttgttgattggctccaggctattgaacgtgtattt |
36378945 |
T |
|
| Q |
358 |
gagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||| ||||| | ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36378944 |
gagtacaaggaaataccagaggagcacaaggtaaagattgttgcagtaaagctaaagaaacatgctttaatttg |
36378871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 87538 - 87629
Alignment:
| Q |
274 |
atcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataa |
365 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| |||||||| || |||||||| || |||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
87538 |
atcaaggtagatattcctgattttgaaggaaagctacatccagatgagttcgttgattggctccaaactgttgaacgagtcttcgagtataa |
87629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 293 - 365
Target Start/End: Original strand, 19803503 - 19803575
Alignment:
| Q |
293 |
attttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataa |
365 |
Q |
| |
|
|||||||||| |||||||| || |||||||| || |||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
19803503 |
attttgaaggaaagctacatccagatgagttcgttgattggctccaaactgttgaacgagtcttcgagtataa |
19803575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 35 - 431
Target Start/End: Complemental strand, 42277551 - 42277164
Alignment:
| Q |
35 |
tagtttgttgaaccgccaccgttaaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaact |
134 |
Q |
| |
|
||||||||||||||| || ||| |||||||||||||||||||||| |||||||||| ||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
42277551 |
tagtttgttgaaccgtcatcgtccaaatgccacctcgaagacaaaatgaaagaagtttgcaagagatggaaa------aaatgaggcgacaaattcaaca |
42277458 |
T |
|
| Q |
135 |
gctccagacgactgtcaatgcccaacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctaga |
234 |
Q |
| |
|
|| || || |||||||||||||||||| | ||||||||||||| | ||||| | | ||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
42277457 |
actacaagagattgtcaatgcccaacaagcccttttggaagcacaacaa--aagagattcaaa-gatcatgtctccggtagtgactcttcatcatctaga |
42277361 |
T |
|
| Q |
235 |
agcagacactcacatcgacgccaacttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggc |
334 |
Q |
| |
|
||||| | |||||| ||||| | ||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||| ||| | ||||||| |
|
|
| T |
42277360 |
agcagtcgctcacaacgacgtgagcttcaaatgaatgatattaaagtagacattccagattttgaagggaatctacaaccagatgattttctagattggc |
42277261 |
T |
|
| Q |
335 |
tacaaactgttgaacgagtatttgagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
|||||| ||| ||||| ||||| | |||||||||||||| ||||||||||| |||||||| ||||| |||||||| ||||||| |||| |||||| |
|
|
| T |
42277260 |
tacaaattgtggaacgtttatttaaatataaggaggttccggaggagcaaaaggtaaagatcgttgctgccaagctgaagaaactcgcttcaatttg |
42277164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 58 - 431
Target Start/End: Original strand, 31487296 - 31487663
Alignment:
| Q |
58 |
aaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaactgctccagacgactgtcaatgccc |
157 |
Q |
| |
|
|||||||||||| ||||||| || | |||| ||| |||||||||||||||||||||||| ||||||||||||| || || ||| |||||||||| |
|
|
| T |
31487296 |
aaaatgccaccttgaagacataatgcaagaggtttgcaagagatggagatggaagaaatgaggcgacaaattcaggaactacaagagaccgtcaatgccc |
31487395 |
T |
|
| Q |
158 |
aacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacgcca |
257 |
Q |
| |
|
|||| || ||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||| | |||||| ||||| | |
|
|
| T |
31487396 |
aacaggccatattggaagcagaacgaagaagagttgatgatgatg---gctcc---agtgactcttcatcttctagaagcagtcgctcacaccgacgtaa |
31487489 |
T |
|
| Q |
258 |
acttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtattt |
357 |
Q |
| |
|
| || ||||||||||||||| || |||||| ||||||| ||||| | || ||||| ||||||||||| |||||||| || || ||||||| |||||| |
|
|
| T |
31487490 |
aactctgatgaatgatatcaaggtcgacattccagatttcgaaggagaactgcaaccagatgagtttgttgattggctccaggctattgaacgtgtattt |
31487589 |
T |
|
| Q |
358 |
gagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||| ||||| | ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31487590 |
gagtacaaggaaataccagaggagcacaaggtaaagattgttgcagtaaagctaaagaaacatgctttaatttg |
31487663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 278 - 431
Target Start/End: Complemental strand, 39817803 - 39817649
Alignment:
| Q |
278 |
aagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataaggaggttcca-g |
376 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| || |||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||| | | |
|
|
| T |
39817803 |
aagtagacattccagattttgaagggaagatacaccccaatgagtttgtgggttggctacaaactgttgaacgtgtatttaagtacaaggaggttctagg |
39817704 |
T |
|
| Q |
377 |
aggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||||||||||||||||| |||| | ||||| |||||||| |||| |||||| |
|
|
| T |
39817703 |
aggagcaaaaagtaaagatcgttgttgttaagctgaagaaacacgcttcaatttg |
39817649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 155 - 431
Target Start/End: Original strand, 64441 - 64712
Alignment:
| Q |
155 |
cccaacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacg |
254 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||| || | |||||| ||||| |
|
|
| T |
64441 |
cccaacaagccttattggaagcacaacgaagaaga---tttgatgttgatggctcaagtagtgactcttcatcatctagaagtagtcgctcacaccgacg |
64537 |
T |
|
| Q |
255 |
ccaacttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagta |
354 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||| || |||| ||||||| |||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
64538 |
tcaacttcggatgaatgatatcaaagtagacattctagattttcaaaggaatctacaacttgatgagtttgtggattggctacaaactgttgaacgtgca |
64637 |
T |
|
| Q |
355 |
tttgagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||| ||||||| | |||| |||||||||| ||||||||||| |
|
|
| T |
64638 |
tttgagtataaggagattccggaggag--aaaagtaaaaattgttgttgtcaagttaaagaaacacgctttaatttg |
64712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 155 - 431
Target Start/End: Original strand, 71773 - 72044
Alignment:
| Q |
155 |
cccaacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctagaagcagacactcacatcgacg |
254 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||| || | |||||| ||||| |
|
|
| T |
71773 |
cccaacaagccttattggaagcacaacgaagaaga---tttgatgttgatggctcaagtagtgactcttcatcatctagaagtagtcgctcacaccgacg |
71869 |
T |
|
| Q |
255 |
ccaacttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagta |
354 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||| || |||| ||||||| |||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
71870 |
tcaacttcggatgaatgatatcaaagtagacattctagattttcaaaggaatctacaacttgatgagtttgtggattggctacaaactgttgaacgtgca |
71969 |
T |
|
| Q |
355 |
tttgagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||| ||||||| | |||| |||||||||| ||||||||||| |
|
|
| T |
71970 |
tttgagtataaggagattccggaggag--aaaagtaaaaattgttgttgtcaagttaaagaaacacgctttaatttg |
72044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 35 - 287
Target Start/End: Original strand, 20642592 - 20642838
Alignment:
| Q |
35 |
tagtttgttgaaccgccaccgttaaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaact |
134 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20642592 |
tagtttgttgaactaccatcgttaaaatgccacctcgaagacaaaatgaaagaagtttgcaagagatggagatggaagaaatgaggcgacaaattcaaca |
20642691 |
T |
|
| Q |
135 |
gctccagacgactgtcaatgcccaacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctaga |
234 |
Q |
| |
|
|| || ||| |||||||||||||||| | ||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20642692 |
actgcaagagaccatcaatgcccaacaagcccttttggaagcacaacgaataaga------tttgatgatggctctggtagtgactcttcatcatctaga |
20642785 |
T |
|
| Q |
235 |
agcagacactcacatcgacgccaacttcagatgaatgatatcaaagtagacat |
287 |
Q |
| |
|
|||| | |||||| ||||| ||||||| |||||||||||||||| ||||||| |
|
|
| T |
20642786 |
agcattcgctcacaccgacgtcaacttcggatgaatgatatcaaaatagacat |
20642838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 365
Target Start/End: Complemental strand, 16776779 - 16776706
Alignment:
| Q |
292 |
gattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataa |
365 |
Q |
| |
|
||||||||||| |||||||| || |||||||| || |||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
16776779 |
gattttgaaggaaagctacatccagatgagttcgttgattggctccaaactgttgaacgagtcttcgagtataa |
16776706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1361 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold1361
Description:
Target: scaffold1361; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 35 - 431
Target Start/End: Original strand, 350 - 737
Alignment:
| Q |
35 |
tagtttgttgaaccgccaccgttaaaatgccacctcgaagacaaaacgaaagaagttaccaagagatggagatggaagaaatgtggcgacaaattcaact |
134 |
Q |
| |
|
||||||||||||||| || ||| |||||||||||||||||||||| |||||||||| ||||||||||| | ||||| ||||| ||||||||| |
|
|
| T |
350 |
tagtttgttgaaccgtcatcgtccaaatgccacctcgaagacaaaatgaaagaagtttgcaagagatggaaa------aaatgaggcgataaattcaaca |
443 |
T |
|
| Q |
135 |
gctccagacgactgtcaatgcccaacaagcattattggaagcacaacgactaagagctgatgatgatgatggctccggtagtgactcttcatcatctaga |
234 |
Q |
| |
|
|| || || |||||||||||||||||| | ||||||||||||| | ||||| | | ||| ||| ||| |||||||||||| |||||||||| |
|
|
| T |
444 |
actacaagagattgtcaatgcccaacaagcccttttggaagcacaacaa--aagagattcaaa-gatcatgtctcaagtagtgactctttatcatctaga |
540 |
T |
|
| Q |
235 |
agcagacactcacatcgacgccaacttcagatgaatgatatcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggc |
334 |
Q |
| |
|
||||| | |||||| ||||| | |||| ||||||||||| ||| ||||||| |||||||||||||||| |||||||| ||||| || | ||||||| |
|
|
| T |
541 |
agcagtcgctcacaacgacgtgagtttcaaatgaatgatattaaatgagacattccagattttgaagggaatctacaaccagatgatttgctagattggc |
640 |
T |
|
| Q |
335 |
tacaaactgttgaacgagtatttgagtataaggaggttccagaggagcaaaaagtaaagattgttgcagccaagctaaagaaacatgctttaatttg |
431 |
Q |
| |
|
|||||| | | ||||| ||||| | ||||||||||||| ||||||||||| |||||||| ||||| |||||||| ||||||| |||| |||||| |
|
|
| T |
641 |
tacaaattatggaacgtttatttaaatataaggaggttctggaggagcaaaaggtaaagatcgttgctgccaagctgaagaaactcgcttcaatttg |
737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 274 - 365
Target Start/End: Complemental strand, 28551 - 28460
Alignment:
| Q |
274 |
atcaaagtagacatttcagattttgaagggaagctacaacctgatgagtttgtggattggctacaaactgttgaacgagtatttgagtataa |
365 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| |||||||| || |||||||| || |||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
28551 |
atcaaggtagatattcctgattttgaaggaaagctacatccagatgagttcgttgattggctccaaactgttgaacgagtcttcgagtataa |
28460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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