View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_high_9 (Length: 451)
Name: NF5554_high_9
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 54348037 - 54348430
Alignment:
| Q |
16 |
gatatacataaaaagagacctcaaactatctaatgtccaaattgaaatcctagtaggcatcatcaaccttttctccttaataggttcctgcctcgctggc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54348037 |
gatatacataaaaagagacctcaaactatctaatgtccaaattgaaatcctagtaggcatcatcaaccttttctccttaataggttcctgcctcgccggc |
54348136 |
T |
|
| Q |
116 |
cgaacctctgactggattggtcgccgttacaccatcgtccttgccggctccatcttcttcgcaggcgcactcctcatgggattctctcccaactttgcct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54348137 |
cgaacctctgactggattggtcgccgttacaccatcgtccttgctggctccatcttcttcgcaggcgcactcctcatgggattctctcccaactttgcct |
54348236 |
T |
|
| Q |
216 |
ttctcatgtttgctcgtttcattgctggtatcggtatcggctacgctctcatgatcgccccggtctacaccgccgaagtctcccctgcttcctctcgcgg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54348237 |
ttctcatgtttgctcgtttcattgctggtatcggtatcggctacgctctcatgatcgccccggtctacaccgccgaagtctcccctgcttcctctcgcgg |
54348336 |
T |
|
| Q |
316 |
cttcctcacctccttccccgaggtacctaatagtacttcgtcttatccttattataagaaacaattcacctgtctaatttttagaataactatgtatctg |
415 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
54348337 |
cttcctcacctccttccccgaggtacctaatagta------cttatccttattataagaaacaattcacttgtctactttttagaataactatgtatctg |
54348430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 117 - 339
Target Start/End: Original strand, 26152840 - 26153062
Alignment:
| Q |
117 |
gaacctctgactggattggtcgccgttacaccatcgtccttgccggctccatcttcttcgcaggcgcactcctcatgggattctctcccaactttgcctt |
216 |
Q |
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||||||| || ||||||||||| |||||||||||||| |||| || |||| ||||| | || || | |||||||| ||||| || |||| ||| |
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| T |
26152840 |
gaacctccgattggattggtcgtcgttacaccatcgtgtttgcaggggccattttctttgtcggagccttactcatgggtttctcaccaaactacaactt |
26152939 |
T |
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| Q |
217 |
tctcatgtttgctcgtttcattgctggtatcggtatcggctacgctctcatgatcgccccggtctacaccgccgaagtctcccctgcttcctctcgcggc |
316 |
Q |
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|||||||||| |||||| |||| || | || |||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| |
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| T |
26152940 |
cctcatgtttggtcgttttgttgccggagttggcatcggctatgctctcatgattgccccggtctataccgctgaagtctcccccgcttcctctcgcggc |
26153039 |
T |
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| Q |
317 |
ttcctcacctccttccccgaggt |
339 |
Q |
| |
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|| ||||| || ||||| ||||| |
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| T |
26153040 |
tttctcacttctttccctgaggt |
26153062 |
T |
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