View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_low_1 (Length: 805)
Name: NF5554_low_1
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 725; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 11 - 791
Target Start/End: Original strand, 29006989 - 29007770
Alignment:
| Q |
11 |
aggagcagagagtctacaatcaaattctcaaattgagtatacagagtttactttgaactaaacaagttcatttgctaacaaacaaattcacagtagcaaa |
110 |
Q |
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| T |
29006989 |
aggagcaaagagtctacaatcaaattctcaaattgagtatacagagtttactttgaactaaacaagttcatttgctaacaaacaaattcacagtagcaaa |
29007088 |
T |
|
| Q |
111 |
gattctcacattagcaacacaagaacatcactcactttggaacaattgactaaagtcactaaaccaaatcacaatctatatgtactaaacaatatgtcat |
210 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007089 |
gattctcacattagcaacacaagatcatcactcactttggaacaattgactaaagtcactaaaccaaatcacaatctatatgtactaaacaatatgtcat |
29007188 |
T |
|
| Q |
211 |
tataaatgaccaaacacccacatcagtgaaataaactgtctagtgtgagctagctagttgatagctgaaaggtgaacnnnnnnntaagaccaagcgaaag |
310 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29007189 |
tatgaatgaccaaacacccacatcagtgaaataaactgtctagtgtgagctagctagttgatagctgaaaggtgaacaaaaaaagaagaccaagcgaaag |
29007288 |
T |
|
| Q |
311 |
ctcggatgattacgagtgtaatcaatggaacacccaaacgaccctcatctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactagg |
410 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007289 |
ctaagatgattacgagtgtaatcaatggaacacccaaacgaccctcatctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactagg |
29007388 |
T |
|
| Q |
411 |
aggagaatcactgtgtggtggactaggaggagaatcaccattcggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttcca |
510 |
Q |
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| T |
29007389 |
aggagaatcactgtgtggtggactaggaggagaatcaccattcggtggactaggaggagaatgagggcgtggtgcagaactaggtggaggagaagttcca |
29007488 |
T |
|
| Q |
511 |
gtgttgttggactgagcttgaactttgacttcaagtttgaggccttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtga |
610 |
Q |
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| T |
29007489 |
gtgttgttggactgagcttgaactttgacttcaagtttgaggccttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtga |
29007588 |
T |
|
| Q |
611 |
ggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacgg |
710 |
Q |
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| T |
29007589 |
ggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacgg |
29007688 |
T |
|
| Q |
711 |
tgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaaattttaa-ttcaagtctcgaaaaata |
791 |
Q |
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| T |
29007689 |
tgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaaattttaatttcaagtctcgaaaaata |
29007770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 454 - 775
Target Start/End: Complemental strand, 21409776 - 21409467
Alignment:
| Q |
454 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
553 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |||| |
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| T |
21409776 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggagg-----------tgttgttggactgagcttgaactttgactttgagtttcaggc |
21409688 |
T |
|
| Q |
554 |
cttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatt |
653 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| | ||||| ||| ||||||||||| |
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| T |
21409687 |
cttgttggcaatggcccattctgccacaaacgaagtagcgttttcctgattcaatgacgtggatcactgtttctcctgagttgtatgtcgaaatggcatt |
21409588 |
T |
|
| Q |
654 |
tgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccg |
753 |
Q |
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||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
21409587 |
tgctattgtacatgtgttgtacccttgttggtttacctcaattacgtcgtacaacggtgtgtaagtaaacactgtcaatcatcacatatccaatgaa-ca |
21409489 |
T |
|
| Q |
754 |
ttcgttattacaaattttaatt |
775 |
Q |
| |
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|| |||||||| |||||||||| |
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| T |
21409488 |
tttgttattaccaattttaatt |
21409467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 454 - 588
Target Start/End: Complemental strand, 21465563 - 21465429
Alignment:
| Q |
454 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
553 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
21465563 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggaggagaagttccagtgttgttggactgagcttgaactttgactttgagtttcaggc |
21465464 |
T |
|
| Q |
554 |
cttgttgacaatgacccattctgccacaaacgaag |
588 |
Q |
| |
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||||||| ||||| ||||||||||||||||||||| |
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| T |
21465463 |
cttgttggcaatggcccattctgccacaaacgaag |
21465429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 604 - 775
Target Start/End: Complemental strand, 21461926 - 21461756
Alignment:
| Q |
604 |
tcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgt |
703 |
Q |
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|||||||||||||||||| ||||||||| ||||| ||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||| || |||| || |
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| T |
21461926 |
tcagtgaggtggatcactatttctccagagttgtatgtcgaaacggcgtttgctattgtacatgtgttgtacccttgttggtttacctcaattacgttgt |
21461827 |
T |
|
| Q |
704 |
ataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaaattttaatt |
775 |
Q |
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| |||||||||||||||||| ||| |||||||||||||||||||||| | || |||||||| |||||||||| |
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| T |
21461826 |
acaacggtgtgtaagtaaacgctgtcaatcatcacatatccaatgaa-catttgttattactaattttaatt |
21461756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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