View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5554_low_11 (Length: 440)

Name: NF5554_low_11
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5554_low_11
NF5554_low_11
[»] chr6 (5 HSPs)
chr6 (130-418)||(7978346-7978634)
chr6 (36-100)||(9402514-9402578)
chr6 (121-160)||(29199903-29199942)
chr6 (106-163)||(34178344-34178401)
chr6 (40-92)||(10925550-10925602)
[»] chr8 (13 HSPs)
chr8 (36-98)||(17108301-17108363)
chr8 (36-117)||(29918532-29918611)
chr8 (36-98)||(5793510-5793572)
chr8 (188-265)||(33631821-33631899)
chr8 (36-117)||(17084191-17084272)
chr8 (36-100)||(6388604-6388668)
chr8 (131-169)||(15173889-15173927)
chr8 (106-168)||(33631909-33631971)
chr8 (36-98)||(36274968-36275029)
chr8 (113-169)||(30481430-30481486)
chr8 (36-100)||(30903971-30904035)
chr8 (108-160)||(30904064-30904116)
chr8 (113-169)||(45236088-45236144)
[»] chr2 (12 HSPs)
chr2 (36-100)||(13531875-13531939)
chr2 (36-100)||(25210303-25210367)
chr2 (36-100)||(34544410-34544474)
chr2 (36-107)||(17845485-17845555)
chr2 (113-168)||(44057907-44057962)
chr2 (36-98)||(29656836-29656898)
chr2 (36-113)||(30696850-30696925)
chr2 (37-100)||(13954672-13954735)
chr2 (37-100)||(14095879-14095942)
chr2 (106-169)||(43371570-43371633)
chr2 (113-169)||(3547190-3547246)
chr2 (50-98)||(42995773-42995821)
[»] chr5 (9 HSPs)
chr5 (205-265)||(39422463-39422524)
chr5 (36-100)||(24207612-24207676)
chr5 (36-100)||(12457442-12457506)
chr5 (39-99)||(16311394-16311453)
chr5 (36-98)||(27900503-27900565)
chr5 (44-98)||(35584050-35584103)
chr5 (44-98)||(38972855-38972909)
chr5 (36-100)||(17153094-17153158)
chr5 (72-100)||(18451985-18452013)
[»] chr7 (12 HSPs)
chr7 (37-100)||(11472811-11472874)
chr7 (112-169)||(42908050-42908107)
chr7 (121-160)||(10990879-10990918)
chr7 (121-169)||(18684010-18684058)
chr7 (109-169)||(37103136-37103196)
chr7 (113-160)||(22973416-22973463)
chr7 (113-168)||(32546220-32546275)
chr7 (136-169)||(29014961-29014994)
chr7 (113-169)||(12980405-12980461)
chr7 (113-169)||(26622979-26623035)
chr7 (131-163)||(28309538-28309570)
chr7 (113-169)||(45380135-45380191)
[»] chr4 (23 HSPs)
chr4 (109-160)||(45065274-45065325)
chr4 (36-98)||(33516174-33516236)
chr4 (36-97)||(37384204-37384265)
chr4 (36-100)||(8843904-8843968)
chr4 (36-100)||(8856868-8856932)
chr4 (36-100)||(9929267-9929331)
chr4 (36-100)||(33616215-33616279)
chr4 (36-100)||(39086087-39086150)
chr4 (49-100)||(9280989-9281040)
chr4 (113-168)||(21544608-21544663)
chr4 (49-97)||(4741318-4741366)
chr4 (40-100)||(21714075-21714135)
chr4 (36-100)||(36919054-36919118)
chr4 (113-160)||(14605944-14605991)
chr4 (42-100)||(21956914-21956971)
chr4 (38-100)||(42907820-42907881)
chr4 (121-169)||(1866559-1866607)
chr4 (113-169)||(9929177-9929233)
chr4 (36-100)||(12075731-12075795)
chr4 (121-169)||(25298843-25298891)
chr4 (113-169)||(29527841-29527897)
chr4 (67-99)||(43553408-43553440)
chr4 (44-100)||(50376451-50376507)
[»] chr1 (10 HSPs)
chr1 (36-98)||(16903441-16903503)
chr1 (36-100)||(42729043-42729107)
chr1 (113-168)||(25154837-25154892)
chr1 (36-100)||(13692570-13692635)
chr1 (36-100)||(36421692-36421756)
chr1 (36-100)||(39219184-39219248)
chr1 (39-98)||(43513130-43513189)
chr1 (40-98)||(5703275-5703332)
chr1 (39-92)||(47644966-47645019)
chr1 (40-101)||(48576216-48576277)
[»] scaffold0059 (1 HSPs)
scaffold0059 (106-168)||(70111-70173)
[»] chr3 (4 HSPs)
chr3 (38-100)||(37032197-37032259)
chr3 (106-169)||(40796147-40796209)
chr3 (36-97)||(27937664-27937725)
chr3 (36-100)||(772893-772956)
[»] scaffold0005 (1 HSPs)
scaffold0005 (113-160)||(211387-211434)
[»] scaffold0013 (1 HSPs)
scaffold0013 (113-159)||(128140-128186)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 130 - 418
Target Start/End: Complemental strand, 7978634 - 7978346
Alignment:
Q  130 attacacgtcccgtacccgtattttgaaatcaggaaaaacgagtcatgacatttggtgagtcaaagccgaaaaagcctgtcaatttaggtttgattcggg 229  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7978634 attacacgtcccgtacccgtattttgaaatcgggaaaaacgagtcatgacatttggtgagtcaaagccgaaaaaacctgtcaatttaggtttgattcggg 7978535  T
Q  230 cggtacccacaggtatgagctttgttgccatgtctaagagatgtataccatatttagaaatcaagtttgaaatactacttgaaatatgagcattttgatc 329  Q
    ||||| |||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7978534 cggtatccacgggtatgaactttgttgccatgtctaagagctgtataccatatttagaaatcaagtttgaaatactacttgaaatatgagcattttgatc 7978435  T
Q  330 ttcatatagtactagacaacatgttaattgaaactttggtatttgaattttcctacagttactctacaatttcctgggcagctagtcta 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7978434 ttcatatagtactagacaacatgttaattgaaactttggtatttgaattttcctacagttactctacaatttcctgggcagctagtcta 7978346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 9402514 - 9402578
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||| |||||||||||  |||| ||| |||||||| ||| || ||||||||||||||    
T  9402514 tgtgagtgaaatgatttagggtttgggtttctatttatataaatggggtactaaattgattttct 9402578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 29199942 - 29199903
Alignment:
Q  121 tatatccctattacacgtcccgtacccgtattttgaaatc 160  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  29199942 tatatccctgttacccgtcccgtacccgtattttgaaatc 29199903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 34178401 - 34178344
Alignment:
Q  106 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcagg 163  Q
    |||||| ||||||| ||||||| | |||| |||| ||||||||| |||||||||||||    
T  34178401 tttggggtgggtacctatatccttgttacccgtctcgtacccgtgttttgaaatcagg 34178344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 10925602 - 10925550
Alignment:
Q  40 agtgaaattatttagggtttaagtttatatctatataaaagggataataaatt 92  Q
    |||||||| ||||||||||| || || ||| ||||||||||| ||||||||||    
T  10925602 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaatt 10925550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 17108301 - 17108363
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 98  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  17108301 tgtgagtgaaattatttagggtttaagtttctatttatataaaatggataataaattgatttt 17108363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 29918532 - 29918611
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggatgggt 117  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||| | ||||||||||||||  ||||||||||||| ||||    
T  29918532 tgtgagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgattt--tttacatttgggacgggt 29918611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 5793510 - 5793572
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 98  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||  |||||| ||||||||||    
T  5793510 tgtgagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgatttt 5793572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 33631899 - 33631821
Alignment:
Q  188 agtcaaagccgaaaaagcctgtcaatttaggtttgattcgggcg-gtacccacaggtatgagctttgttgccatgtcta 265  Q
    ||||||||| | |||| || |||||||||| |||| |||||| | |||||||| |||||| ||||||||||||||||||    
T  33631899 agtcaaagcgggaaaaacccgtcaatttagatttggttcgggtgcgtacccacgggtatgggctttgttgccatgtcta 33631821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 17084272 - 17084191
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggatgggt 117  Q
    |||||| | ||| |||||||| ||  |||||||| ||||||||| ||| |||||||||||||| |||||||| | |||||||    
T  17084272 tgtgaggggaataatttagggcttgggtttatatttatataaaaaggacaataaattgattttttttacattcgtgatgggt 17084191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 6388668 - 6388604
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||| |||||||||||  |||| | | ||||||||| || |||||||||||||||||    
T  6388668 tgtgagtgaaatgatttagggtttgggtttctgtttatataaaatgggtaataaattgattttct 6388604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 15173927 - 15173889
Alignment:
Q  131 ttacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  15173927 ttacccgtcccgtacccgtattttgaaatcgggaaaaac 15173889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 33631971 - 33631909
Alignment:
Q  106 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 168  Q
    |||||| |||||||||||||||| ||||| |||||| ||||| | |||||| |||||| ||||    
T  33631971 tttggggtgggtacttatatccccattactcgtcccatacccatgttttgagatcaggtaaaa 33631909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 36274968 - 36275029
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 98  Q
    |||||||||||| ||||||||||   |||| ||| ||||||||||||||| ||||||||||||    
T  36274968 tgtgagtgaaatgatttagggttgg-gtttctatttatataaaagggatagtaaattgatttt 36275029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 30481486 - 30481430
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    ||||||| |||||||  ||||| |||| | ||| |||||||||||||||||||||||    
T  30481486 tgggtacctatatcctcattactcgtctcatactcgtattttgaaatcaggaaaaac 30481430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 30903971 - 30904035
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||| ||||| |||||  |||| ||| ||||||||| |  |||||||||||||||||    
T  30903971 tgtgagtgaaatgatttaaggttttggtttctatttatataaaatgtgtaataaattgattttct 30904035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 30904064 - 30904116
Alignment:
Q  108 tgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 160  Q
    |||| |||||||||||||| | ||||| |||| ||||||||| ||||||||||    
T  30904064 tggggtgggtacttatatctccattacccgtctcgtacccgtgttttgaaatc 30904116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 45236088 - 45236144
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    ||||||| ||||| || ||||| |||||| ||||||| ||||||||||||| |||||    
T  45236088 tgggtacctatatacccattacccgtcccatacccgtgttttgaaatcagggaaaac 45236144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 13531875 - 13531939
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||| ||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||    
T  13531875 tgtgagtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttct 13531939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 25210303 - 25210367
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||| ||||||||||| ||||| ||| ||||||||| || ||| |||||||||||||    
T  25210303 tgtgagtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattgattttct 25210367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 34544474 - 34544410
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    ||||| |||||||||||||||||| ||||| ||| ||||||||| || |||||||| ||||||||    
T  34544474 tgtgaatgaaattatttagggtttgagtttttatttatataaaatgggtaataaatagattttct 34544410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 17845555 - 17845485
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatt 107  Q
    |||||||||||| ||||||| ||  ||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  17845555 tgtgagtgaaatgatttaggtttggagtttctatttatataaaaaggataataaattgatttt-tttacatt 17845485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 44057907 - 44057962
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 168  Q
    ||||||| |||||||| ||||| ||||||||||| |||||||||||||||| ||||    
T  44057907 tgggtacatatatccccattacccgtcccgtaccggtattttgaaatcagggaaaa 44057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 29656898 - 29656836
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 98  Q
    ||||||| |||| ||||||||||   |||| ||| ||||||||||||||||||||||||||||    
T  29656898 tgtgagtcaaatgatttagggttatggtttttatttatataaaagggataataaattgatttt 29656836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 30696850 - 30696925
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggat 113  Q
    ||||||||| || ||||||||||| | ||| ||| ||||||||| || ||||||||||||||  ||||||||||||||    
T  30696850 tgtgagtgacatgatttagggtttgaatttctatttatataaaatgggtaataaattgattt--tttacatttgggat 30696925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 13954672 - 13954735
Alignment:
Q  37 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    ||||||||||| ||||||||||  ||||| ||| |||||||||| | |||||| ||||||||||    
T  13954672 gtgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttct 13954735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 14095879 - 14095942
Alignment:
Q  37 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    ||||||||||| ||||||||||  ||||| ||| |||||||||| | |||||| ||||||||||    
T  14095879 gtgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttct 14095942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 43371570 - 43371633
Alignment:
Q  106 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    |||||| ||||||| ||||||||  |||| ||||||||||||||||||| ||||| || |||||    
T  43371570 tttggggtgggtacatatatccccgttacccgtcccgtacccgtattttaaaatcggggaaaac 43371633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 3547190 - 3547246
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    ||||||| |||||| |  |||| ||||||||||||||||||||||||| | ||||||    
T  3547190 tgggtacatatatctccgttacccgtcccgtacccgtattttgaaatcggtaaaaac 3547246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 42995773 - 42995821
Alignment:
Q  50 tttagggtttaagtttatatctatataaaagggataataaattgatttt 98  Q
    |||| ||||||||||| ||| |||||||||| ||||||||||| |||||    
T  42995773 tttacggtttaagtttttatttatataaaagagataataaattaatttt 42995821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 39422463 - 39422524
Alignment:
Q  205 cctgtcaatttaggtttgattcgggcggt-acccacaggtatgagctttgttgccatgtcta 265  Q
    ||||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||||||    
T  39422463 cctgtcaatttgggtgtggttcgggcggttacccacaggtatgagctttgttgccatgtcta 39422524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 24207612 - 24207676
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||| ||||||||||||| ||||| ||| |||||||||||  ||||||||| |||||||    
T  24207612 tgtgagtgaagttatttagggttttagtttttatttatataaaaggattaataaattaattttct 24207676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 12457442 - 12457506
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||| ||||||  |||| |||| ||| ||||| |||||| |||||||||||||||||    
T  12457442 tgtgagtgaaatgatttagactttaggtttctatttatattaaaggggtaataaattgattttct 12457506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 16311453 - 16311394
Alignment:
Q  39 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttc 99  Q
    |||| |||| |||||||||||  |||| ||| |||||||||||||||||||||||||||||    
T  16311453 gagtaaaatgatttagggtttg-gtttctatttatataaaagggataataaattgattttc 16311394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 27900565 - 27900503
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 98  Q
    ||||| |||||| ||||||||||| ||||| ||| |||||||||| |  ||||||||||||||    
T  27900565 tgtgactgaaatgatttagggtttcagtttctatttatataaaagaggaaataaattgatttt 27900503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 35584050 - 35584103
Alignment:
Q  44 aaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 98  Q
    |||| ||||||||||| ||||| ||| |||||||||||| |||||||||||||||    
T  35584050 aaatgatttagggtttgagtttctatttatataaaaggg-taataaattgatttt 35584103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 38972855 - 38972909
Alignment:
Q  44 aaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 98  Q
    |||| ||||||||||| |||||  || |||||||||||| |||||||||||||||    
T  38972855 aaatgatttagggtttcagtttcgatttatataaaagggttaataaattgatttt 38972909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 17153094 - 17153158
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||||||||||| |||   ||| ||| ||| || ||||| |||||||||||||||||    
T  17153094 tgtgagtgaaattatttaggttttggatttctatttatctagaaggggtaataaattgattttct 17153158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 18452013 - 18451985
Alignment:
Q  72 atataaaagggataataaattgattttct 100  Q
    |||||||||||||||||||||||||||||    
T  18452013 atataaaagggataataaattgattttct 18451985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 11472874 - 11472811
Alignment:
Q  37 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    ||||||||||| |||||||||||  |||| ||| ||||||||||| ||||||||||||||||||    
T  11472874 gtgagtgaaatgatttagggttttggtttctatttatataaaaggtataataaattgattttct 11472811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 42908107 - 42908050
Alignment:
Q  112 atgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||||| || |||||    
T  42908107 atgggtacatatatccccattacccgtcccgtacccgtattttgaaatcggggaaaac 42908050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 10990918 - 10990879
Alignment:
Q  121 tatatccctattacacgtcccgtacccgtattttgaaatc 160  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  10990918 tatatccctattacccgtcccgtacccgtattttgaaatc 10990879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 18684010 - 18684058
Alignment:
Q  121 tatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    ||||||||| |||| ||||||||||||||||||||||||| || |||||    
T  18684010 tatatccctgttacccgtcccgtacccgtattttgaaatcggggaaaac 18684058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 37103196 - 37103136
Alignment:
Q  109 gggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    ||||||||| | |||||||   |||| | ||||||||||||||||||||||||||||||||    
T  37103196 gggatgggtgcatatatcctcgttacccttcccgtacccgtattttgaaatcaggaaaaac 37103136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 22973416 - 22973463
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 160  Q
    |||||||  ||||||| ||||| |||||||||||||||||||||||||    
T  22973416 tgggtacagatatccccattacccgtcccgtacccgtattttgaaatc 22973463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 32546220 - 32546275
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 168  Q
    ||||||| ||||||||  |||| ||| ||||||||||||||||||||| |||||||    
T  32546220 tgggtacatatatccccgttacccgttccgtacccgtattttgaaatcgggaaaaa 32546275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 29014994 - 29014961
Alignment:
Q  136 cgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    ||||||||||||||||||||||||| ||||||||    
T  29014994 cgtcccgtacccgtattttgaaatcgggaaaaac 29014961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 12980405 - 12980461
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||| || |||||    
T  12980405 tgggtacttatatacccattacccgtcccatacccgtgttttgaaatcggggaaaac 12980461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 26622979 - 26623035
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    ||||||||||||| || ||||| | |||| ||||||| ||||||||||||| |||||    
T  26622979 tgggtacttatatacccattacccatcccatacccgtgttttgaaatcagggaaaac 26623035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 28309538 - 28309570
Alignment:
Q  131 ttacacgtcccgtacccgtattttgaaatcagg 163  Q
    |||| ||||||||||||||||||||||||||||    
T  28309538 ttacccgtcccgtacccgtattttgaaatcagg 28309570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 45380135 - 45380191
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    ||||||| ||||| ||  |||| |||||| |||||||||||||||||| ||||||||    
T  45380135 tgggtacctatatacccgttacccgtcccatacccgtattttgaaatcgggaaaaac 45380191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 45065274 - 45065325
Alignment:
Q  109 gggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 160  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||||||||||    
T  45065274 gggatgggtacatatatccctgttactcgtcccgtacccgtattttgaaatc 45065325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 33516236 - 33516174
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 98  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||||| ||||| |||||||||    
T  33516236 tgtgagtgaaatgatttagggtttgagtttttatttatataaaaggggtaatacattgatttt 33516174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 37384204 - 37384265
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattt 97  Q
    |||||||||||| ||||||||||| |  || ||| |||||||||||||||||||||||||||    
T  37384204 tgtgagtgaaatgatttagggtttgaacttctatttatataaaagggataataaattgattt 37384265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 8843968 - 8843904
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||| ||||||| ||||||||| ||| ||||| |||||| ||||||||| |||||||    
T  8843968 tgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttct 8843904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 8856932 - 8856868
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||| ||||||| ||||||||| ||| ||||| |||||| ||||||||| |||||||    
T  8856932 tgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttct 8856868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 9929331 - 9929267
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    ||||||||||||||||||| |||| ||||||||| |||||  ||| | |||||||||||||||||    
T  9929331 tgtgagtgaaattatttagagtttcagtttatatttatatggaagaggtaataaattgattttct 9929267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 33616279 - 33616215
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||| |||||||||||   ||| ||| |||||||||||| |||||||||||||||||    
T  33616279 tgtgagtgaaatgatttagggttttgatttttatttatataaaaggggtaataaattgattttct 33616215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 39086087 - 39086150
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||| || || ||||||||||||||    
T  39086087 tgtgagtgaaatgatttagggtttaagtttctatttatataaaaagg-tagtaaattgattttct 39086150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 9281040 - 9280989
Alignment:
Q  49 atttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| |||||||    
T  9281040 atttagggtttgaatttctatctatataaaagggataataaatttattttct 9280989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 21544608 - 21544663
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 168  Q
    ||||||| |||||||| |||||  |||||||||||||||||||||||| |||||||    
T  21544608 tgggtacatatatccccattacctgtcccgtacccgtattttgaaatcgggaaaaa 21544663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 4741366 - 4741318
Alignment:
Q  49 atttagggtttaagtttatatctatataaaagggataataaattgattt 97  Q
    ||||||||||| ||||| ||| ||||||||| |||||||||||||||||    
T  4741366 atttagggtttgagtttctatttatataaaatggataataaattgattt 4741318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 21714135 - 21714075
Alignment:
Q  40 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||| ||||||||||| ||||| ||| |||||||||| | ||||||||| |||||||    
T  21714135 agtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttct 21714075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 36919054 - 36919118
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||| |||||| |||| ||||| ||| |||||||||| | ||||||| |||||||||    
T  36919054 tgtgagtgaaatgatttagagtttgagtttctatttatataaaagtggtaataaactgattttct 36919118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 14605991 - 14605944
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 160  Q
    ||||||| ||||||||| |||| |||| ||||||||||||||||||||    
T  14605991 tgggtacatatatccctgttacccgtctcgtacccgtattttgaaatc 14605944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 21956971 - 21956914
Alignment:
Q  42 tgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||| |||||||||||  |||| ||| |||||||||||| |||||||||||||||||    
T  21956971 tgaaatgatttagggtttgggtttttatttatataaaaggg-taataaattgattttct 21956914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 42907820 - 42907881
Alignment:
Q  38 tgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||| ||||||||||| ||||| ||| |||||||||| | || ||||||||||||||    
T  42907820 tgagtgaaatgatttagggtttgagtttctatttatataaaagag-tagtaaattgattttct 42907881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 1866607 - 1866559
Alignment:
Q  121 tatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    |||||||  ||||| |||| |||||||||||||||||||| ||||||||    
T  1866607 tatatccgcattacccgtctcgtacccgtattttgaaatcgggaaaaac 1866559  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 9929233 - 9929177
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    ||||||| ||||||| | |||| ||| |  |||||||||||||||||||||||||||    
T  9929233 tgggtacctatatccatgttacccgtactatacccgtattttgaaatcaggaaaaac 9929177  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 12075795 - 12075731
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||| ||||||| ||| || |||| ||||| ||| ||||||||| || |||||||||||||||||    
T  12075795 tgtgggtgaaatgattcagagttttagtttctatttatataaaatgggtaataaattgattttct 12075731  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 25298891 - 25298843
Alignment:
Q  121 tatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    |||||||| ||||| | |||||||||||| |||||||||| ||||||||    
T  25298891 tatatccccattacccatcccgtacccgtgttttgaaatccggaaaaac 25298843  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 29527841 - 29527897
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    ||||||| ||||||||  |||| |||| |||||||||||||||||||| || |||||    
T  29527841 tgggtacatatatccccgttacccgtcacgtacccgtattttgaaatcggggaaaac 29527897  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 43553408 - 43553440
Alignment:
Q  67 tatctatataaaagggataataaattgattttc 99  Q
    |||||||||||||||| ||||||||||||||||    
T  43553408 tatctatataaaaggggtaataaattgattttc 43553440  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 50376507 - 50376451
Alignment:
Q  44 aaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||| |||||| |||| ||||| ||| ||||||||| ||| ||||||||||||||||    
T  50376507 aaataatttagcgttttagtttctatttatataaaatggaaaataaattgattttct 50376451  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 16903441 - 16903503
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 98  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||| ||  ||||||||||||||    
T  16903441 tgtgagtgaaataatttagggtttgagtttatatttatataaaaagggcaataaattgatttt 16903503  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 42729107 - 42729043
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||| |||||| || ||||||| ||| |||||||||||||| ||||||| |||||||    
T  42729107 tgtgagtgaaatgatttagtgtataagtttctatttatataaaagggatgataaatttattttct 42729043  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 25154892 - 25154837
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 168  Q
    |||||||||||||||| ||||| |||||||||| ||| |||||||||| |||||||    
T  25154892 tgggtacttatatccccattactcgtcccgtactcgtgttttgaaatcgggaaaaa 25154837  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 13692570 - 13692635
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataat-aaattgattttct 100  Q
    |||| ||||||| |||||||||||  |||| ||| ||||||||||||||||| |||||||||||||    
T  13692570 tgtgggtgaaatgatttagggttttggtttctatttatataaaagggataataaaattgattttct 13692635  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 36421692 - 36421756
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    ||||| |||||| |||||| |||  ||||| ||| ||||||| ||||||||||||||||||||||    
T  36421692 tgtgaatgaaatgatttagagttcgagtttttatttatataagagggataataaattgattttct 36421756  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 39219184 - 39219248
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||| ||||| ||||||||||| ||||| ||| |||||||||| | ||||||||| |||||||    
T  39219184 tgtgagcgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttct 39219248  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 43513189 - 43513130
Alignment:
Q  39 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 98  Q
    ||||||||||||||||||||| ||||| ||| ||||||||| |  | |||||||||||||    
T  43513189 gagtgaaattatttagggtttgagtttctatttatataaaaagagttataaattgatttt 43513130  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 5703332 - 5703275
Alignment:
Q  40 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 98  Q
    |||||||| ||||||| ||| ||||||||| ||||||||||  ||||||||||||||||    
T  5703332 agtgaaatgatttaggatttgagtttatat-tatataaaagatataataaattgatttt 5703275  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 47645019 - 47644966
Alignment:
Q  39 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaatt 92  Q
    ||||||||| ||||||| | | ||||| ||| ||||||||||||||||||||||    
T  47645019 gagtgaaatgatttaggatctgagtttctatttatataaaagggataataaatt 47644966  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 48576277 - 48576216
Alignment:
Q  40 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctt 101  Q
    |||||||| ||||||||||| || || ||| |||| |||| |||| ||||||||||||||||    
T  48576277 agtgaaatgatttagggtttgagattttatttatacaaaaaggattataaattgattttctt 48576216  T

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Target: scaffold0059 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 70111 - 70173
Alignment:
Q  106 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 168  Q
    |||||| ||||||| |||||||   |||| ||||||||||||||||| |||||||||||||||    
T  70111 tttggggtgggtacatatatcctcgttacccgtcccgtacccgtattatgaaatcaggaaaaa 70173  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 37032259 - 37032197
Alignment:
Q  38 tgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||| ||||||||||| ||||| ||| ||||||||| || ||||||||| |||||||    
T  37032259 tgagtgaaatgatttagggtttgagtttttatttatataaaatgggtaataaattaattttct 37032197  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 40796209 - 40796147
Alignment:
Q  106 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 169  Q
    |||||| ||||||| | |||||  ||||| ||||||||||||||||||||||||| ||||||||    
T  40796209 tttggggtgggtacatgtatcctcattacccgtcccgtacccgtattttgaaatc-ggaaaaac 40796147  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 27937664 - 27937725
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattt 97  Q
    |||||||||||| |||||||||||| |||| ||| ||||||||||   ||||||||| ||||    
T  27937664 tgtgagtgaaatgatttagggtttaggtttctatttatataaaagctgtaataaattaattt 27937725  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 772956 - 772893
Alignment:
Q  36 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 100  Q
    |||||||||||| ||| | ||||| ||||| ||| |||| ||||||| |||||||||||||||||    
T  772956 tgtgagtgaaatgattcaaggtttgagtttctatttatacaaaaggg-taataaattgattttct 772893  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 211387 - 211434
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 160  Q
    ||||||| ||||||||| |||| |||| ||||||||||||||||||||    
T  211387 tgggtacatatatccctgttacccgtctcgtacccgtattttgaaatc 211434  T

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Target: scaffold0013 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 128186 - 128140
Alignment:
Q  113 tgggtacttatatccctattacacgtcccgtacccgtattttgaaat 159  Q
    ||||||| |||||||| ||||| ||||||||||||||||| ||||||    
T  128186 tgggtacatatatccccattacccgtcccgtacccgtattatgaaat 128140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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