View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_low_13 (Length: 357)
Name: NF5554_low_13
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 47456043 - 47456366
Alignment:
| Q |
20 |
tagtgagtgcagggtggtgtttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttgccaaccaagt |
119 |
Q |
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| T |
47456043 |
tagtgagtgcagggtggtgtttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttgccaaccaagt |
47456142 |
T |
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| Q |
120 |
taaatagatttaaataattgtcaaggacattgctgctatttgcatatttctacttttcatcaaatagattattttttgttcaatttgtttgtgtttaatc |
219 |
Q |
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| T |
47456143 |
taaatagatttaaataattgtcaaggacattgctgctatttgcatatttctacttttcatcaaatagattattttttgttcaatttgtttgtgtttaatc |
47456242 |
T |
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| Q |
220 |
ataagggtaaatttgttaatgttaagagagaataatattagaaagtgaatgatgtccactgcattcaataaaaagtatgcaactgagtagagcctaagac |
319 |
Q |
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| T |
47456243 |
ataagggtaaatttgttaatgttaagagagaataatattagaaagtgaatgatgtccattgcattcaataaaaagtatgcaactgagtagagcctaagac |
47456342 |
T |
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| Q |
320 |
ttaaccaggtttttagttcttcat |
343 |
Q |
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| T |
47456343 |
ttaaccaggtttttagttcttcat |
47456366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 47461852 - 47461926
Alignment:
| Q |
35 |
ggtgtttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttg |
109 |
Q |
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| T |
47461852 |
ggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttg |
47461926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 47468792 - 47468871
Alignment:
| Q |
30 |
agggtggtgtttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttg |
109 |
Q |
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| T |
47468792 |
agggtggtgtttgtttgcaggtgcaaatttgagttttgctatgcgtgtggtgcaggatggacatcttctcatggtggttg |
47468871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 47464678 - 47464734
Alignment:
| Q |
31 |
gggtggtgtttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaat |
87 |
Q |
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| T |
47464678 |
gggtggtgtttgtttgcaggtgcaaatttcagttttgctatgctcgcggagcacaat |
47464734 |
T |
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