View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_low_15 (Length: 351)
Name: NF5554_low_15
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 23 - 335
Target Start/End: Complemental strand, 41766433 - 41766126
Alignment:
| Q |
23 |
cacagaaatcatcaaaaagtcatcacttttatttttcattccaaacaacattgaattgagttaataaacatttagatcatcctcaaaattgtaaatacga |
122 |
Q |
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| T |
41766433 |
cacagaaatcatcaaaaagtcatcacttttatttttcattccaaacaacattgaatt-----aataaacatttagatcatcctcaaaattgtaaatacta |
41766339 |
T |
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| Q |
123 |
gacaattggtcccaaattacacgaaatgaaaattagtccttgaacttaaagatcgtcaatcaattcagtcattttgtcgtttaatagatcagaaatattg |
222 |
Q |
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| T |
41766338 |
gacaattggtcccaaattacacgaaatgaaaattagtccttgaacttaaagatcgtcaatcaattcagtcattctgtcgtttaatagatcagaaatattg |
41766239 |
T |
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| Q |
223 |
agttaacatgttatgacatttagctccagcatgtatctaataatttgtttataacttatattgatctctattcagcaatttatagtgttgtttaatttca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41766238 |
agttaacatgttatgacatttagctccagcatgtatctaataatttgtttataacttatattgatctctattcagcaatttatagtgttgtttaatttca |
41766139 |
T |
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| Q |
323 |
tgaactggcaagt |
335 |
Q |
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||||||||||||| |
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| T |
41766138 |
tgaactggcaagt |
41766126 |
T |
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