View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_low_16 (Length: 338)
Name: NF5554_low_16
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 323
Target Start/End: Original strand, 25862626 - 25862941
Alignment:
| Q |
8 |
ccaagaatatttcacaagcaaaaagatcaaaatttgaaaaaacaattaaggtggcatcaattagataaaacaaaagtggattatcaagattaattgccaa |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
25862626 |
ccaaaaatatttcacaagcaaaaagatcaaaatttgaaaaaacaattaaggtggcatcaattagataaaacaaaagtagattattaagattaattgccaa |
25862725 |
T |
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| Q |
108 |
acataacccaaattcataaaccgaaataactaaaaccattccatgctcatcgcacgaacaacagaatttagcaccggaacttagtttgcttttacaaatc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25862726 |
acataacccaaattcataaaccgaaataactaaaaccattccatgctcattgcacgaacaacagaattaagcaccggaacttagtttgcttttacaaatc |
25862825 |
T |
|
| Q |
208 |
ctttttcgtttatgacagaatcaataaagtttccgaataataatgcaacaacaatatttgaaatcaaagtcaaatataacgatttgtttctagttttaaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25862826 |
ctttttcgtttatgacagaatcaataaagtttccgaataataatgcaacaacaatatttgaaatcaaagtcaaatataacgatttgtttctaattttaaa |
25862925 |
T |
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| Q |
308 |
ctaaatggaacgaact |
323 |
Q |
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||||||||||| |||| |
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| T |
25862926 |
ctaaatggaacaaact |
25862941 |
T |
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