View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_low_21 (Length: 292)
Name: NF5554_low_21
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 8352311 - 8352043
Alignment:
| Q |
13 |
aatatatacccgaggatcaaaacaatattcgaggatcaaaatgactaatattagagagatttggtgt------actcatagcttcgtggatttggttaaa |
106 |
Q |
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| T |
8352311 |
aatatatacccgaggtccaaaacaatattcgaggatcaaaatgacaaattttaaagagatttggtgtgcttgtactcatagcttcttgaatttggttaaa |
8352212 |
T |
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| Q |
107 |
ctcagcctaattaagcagtggttatctcatacctggtttgttctattgaaccgtttctataaaattttcattgagcattaagctgtgattaccaacaaaa |
206 |
Q |
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| T |
8352211 |
ctgagcctagttaagcagtggttatctcatacctggtttgttctattgaaccgtttctatgaaattttcattgagcattaagcagtgattactaacaaaa |
8352112 |
T |
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| Q |
207 |
gggtctctttggttgttctttggtaagttttattatgttcatgtttatagcacctatatatgatccaaa |
275 |
Q |
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| T |
8352111 |
gggcctctttggttgttctttggtaagttttattatgttcatgtttatagcacctatatatgattcaaa |
8352043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 74 - 275
Target Start/End: Complemental strand, 8365699 - 8365485
Alignment:
| Q |
74 |
tggtgtactcatagcttcgtggatttggttaaactcagcctaattaagcagtggttatctcatacctggtttgttctattgaaccgtttctataaaattt |
173 |
Q |
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| T |
8365699 |
tggtgtactcgtagcttcttggaattggttaaactcagcctagttaagcagcggttacctcatacctggtttgttctgttgaactgtttctatgagattt |
8365600 |
T |
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| Q |
174 |
tcattgag--------------cattaagctgtgattaccaacaaaagggtctctttggttgttctttggtaagttttattatgttcatgtttatagcac |
259 |
Q |
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| T |
8365599 |
taatcgaggtacctgtttgatgcattac-ctgtggataccaacaaaagggcctctttgattgttctttggtaagttttattatgttgatgtttatagcac |
8365501 |
T |
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| Q |
260 |
ctatatatgatccaaa |
275 |
Q |
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| T |
8365500 |
ctatatatgatccaaa |
8365485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 8357230 - 8357142
Alignment:
| Q |
184 |
ttaagctgtgattaccaacaaaagggtctctttggttgttct-ttggtaagttttattatgttcatgtttatagcacctatatatgatc |
271 |
Q |
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| T |
8357230 |
ttaagcagtggttaccaacaaaagggcctctttgattgttctgttgcaaagttttattatgttcatgtttatagcacctatgtatgatc |
8357142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 8357273 - 8357217
Alignment:
| Q |
74 |
tggtgtactcatagcttcgtggatttggttaaactcagcctaattaagcagtggtta |
130 |
Q |
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| T |
8357273 |
tggtgtactcatagcttcttggatttggttaaacttagcctagttaagcagtggtta |
8357217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 8365866 - 8365828
Alignment:
| Q |
37 |
atattcgaggatcaaaatgactaatattagagagatttg |
75 |
Q |
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| T |
8365866 |
atattcgaggaccaaaatgactaatattagagaaatttg |
8365828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 8357434 - 8357402
Alignment:
| Q |
43 |
gaggatcaaaatgactaatattagagagatttg |
75 |
Q |
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| T |
8357434 |
gaggaccaaaatgactaatattagagagatttg |
8357402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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