View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_low_24 (Length: 249)
Name: NF5554_low_24
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 54080492 - 54080249
Alignment:
| Q |
1 |
agtggtggtgccactgtcagttccctaagttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagat |
100 |
Q |
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| T |
54080492 |
agtggtggtgccactgtcagtctcctaagttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagat |
54080393 |
T |
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| Q |
101 |
tactatatctaggtgttcattcttatacatggttcaagaatgctattatatttacccttctgagagtgacttactcagtgggggatcattgatcatttct |
200 |
Q |
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| T |
54080392 |
tactatatctaggtgttcattcttatacaaggttcaagaatgctattatatttacccttctgagagtgacttactcagtaggggatcattgatcatttct |
54080293 |
T |
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| Q |
201 |
gaactcttcttttggattcatttgttaatgatcatattcttgga |
244 |
Q |
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| T |
54080292 |
gaactcttcttttggattcatttgttaatgatcatatttttgga |
54080249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 54083669 - 54083555
Alignment:
| Q |
30 |
ttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagattactatatctaggtgttcattcttataca |
129 |
Q |
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| T |
54083669 |
ttttgtataagctagtagtggt----atatcattaactttttgttgcatgatgatcaatttgcacctagattactatatct-ggtgctcattcttatgga |
54083575 |
T |
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| Q |
130 |
tggttcaagaatgctattat |
149 |
Q |
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| T |
54083574 |
aggttcaagaatgcttttat |
54083555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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