View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_low_7 (Length: 529)
Name: NF5554_low_7
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 6 - 426
Target Start/End: Complemental strand, 54081059 - 54080620
Alignment:
| Q |
6 |
aggtgcagccattaatgtagcagcttgaagtagcaaatcaagcaaaggtaaactaaggatatcgaacaatatagtataatatttattat----------- |
94 |
Q |
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| T |
54081059 |
aggtgcagccattaatgtagcagcttgaagtagcaaatcaagcaaaggtaaactaaggatatcgaacaatatagtataatatttattatatagaattgaa |
54080960 |
T |
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| Q |
95 |
------ttagagggtatgcagtgtatttgttgttgatactctgaagaggttttgaagtat--ttatagctgctgaatgctcttgttttggtgtgaacatg |
186 |
Q |
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| T |
54080959 |
caaactttagagggtatgcagtgtatttgttgttgatactctgaagaggttttgaagtatatttatagccgctgaatgctctagttttggtgtgaacatg |
54080860 |
T |
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| Q |
187 |
tggaatgattattttaagtttgaggctagaaagtgggggaaatcatatttgcgtggcatatttggatttggatgaacaaaaacttgtggttgaagcccct |
286 |
Q |
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| T |
54080859 |
tggaatgattattttaagtttgaggctagaaagtgggggaaatcatatttgcgtggcatatttggatttggatgaacaaaaacttgtggttgaagcccct |
54080760 |
T |
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| Q |
287 |
tgaacatgcacattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatgaaaggctgtttatta |
386 |
Q |
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| T |
54080759 |
tgaacatgcacattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatgaaaggctgtttatta |
54080660 |
T |
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| Q |
387 |
ttgactatatgcatgataatatgacatggtgtttttgctc |
426 |
Q |
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| T |
54080659 |
ttgactatatgcatgataatatgacatggtgtttttgctc |
54080620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 173 - 394
Target Start/End: Complemental strand, 54084228 - 54084009
Alignment:
| Q |
173 |
ttggtgtgaacatgtggaatgattattttaagtttgaggctagaaagtgggggaaatcatatttgcgtggcatatttggatttggatgaacaaaaacttg |
272 |
Q |
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| T |
54084228 |
ttggtgtgaaaatgcggaatgattattttaagtttgaggctagaaagtagaggagatcatattggcgtggcatatttgaatttggatggataaaaacttg |
54084129 |
T |
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| Q |
273 |
tggttgaagccccttgaacatgcacattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatga |
372 |
Q |
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| T |
54084128 |
tggttgaaacgccttgaacttgctcattggcatgatttatggcatgtgccaataca--atgccgactcatacgatggccactctacttagtggaggatga |
54084031 |
T |
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| Q |
373 |
aaggctgtttattattgactat |
394 |
Q |
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| T |
54084030 |
aaggttgtttattgttgactat |
54084009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 459 - 520
Target Start/End: Complemental strand, 54080584 - 54080523
Alignment:
| Q |
459 |
ctgatcctttgcgtgaacagctcatctcatggttataggtgaggtagggattttgtctgtgc |
520 |
Q |
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| T |
54080584 |
ctgatcctttgcgtggacagctcatctcatggttataggtgaggtagggattttgtctgtgc |
54080523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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