View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5554_low_8 (Length: 476)
Name: NF5554_low_8
Description: NF5554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5554_low_8 |
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| [»] scaffold0565 (2 HSPs) |
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| [»] scaffold0808 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 21 - 300
Target Start/End: Original strand, 3916 - 4195
Alignment:
| Q |
21 |
ataggttgatgggctggttatgatgtcttgaaagataccataaacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaaga |
120 |
Q |
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| T |
3916 |
ataggttgatgggctggttatgatgtcttgaaagataccataaacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaaga |
4015 |
T |
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| Q |
121 |
gatcttaatccattgttgaataattgatttgcagaattgattcttgctacacatgttctaccatctgggctgttttgggccaatgcatttggggtgcaac |
220 |
Q |
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| T |
4016 |
gatcttaatccattgttgaataattgatttgcagaattgattcttgctacacatgttctaccatctgggctgttttgggccaatgcatttggggtgcaac |
4115 |
T |
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| Q |
221 |
ctatttgaccaactccaaataacgccattttccttgccccataattatataaaatctgaatcacaaacacaaaaattgaa |
300 |
Q |
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| T |
4116 |
ctatttgaccaactccaaataacgccattttccttgccccataattatataaaatctgaattacaaacacaaaaattgaa |
4195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 347 - 459
Target Start/End: Original strand, 4197 - 4309
Alignment:
| Q |
347 |
gtgacataatatgagccattagatcaattcattataacggttgatatttgatgtaaccctagtgttaacggattctaactcatataatgcatatagaaaa |
446 |
Q |
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| T |
4197 |
gtgacataatatgagccattagatcaattcattataacggttgatatttggtgtaaccctagtgttaacggattctaacttatataatgcatatagaaaa |
4296 |
T |
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| Q |
447 |
agagtctgaccct |
459 |
Q |
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| T |
4297 |
agagtctgaccct |
4309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 27 - 297
Target Start/End: Complemental strand, 7615917 - 7615647
Alignment:
| Q |
27 |
tgatgggctggttatgatgtcttgaaagataccataaacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaagagatctt |
126 |
Q |
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||||||| || ||||||| |||||||| ||||||||| ||||||||| |||||||||||||| | ||| | || |||||||||| |||||||||| | |
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| T |
7615917 |
tgatgggttgtttatgatatcttgaaaaataccataagtatttacatagatgaatcttgcatccgtaagctcattgttgagttgattaacaagagatttc |
7615818 |
T |
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| Q |
127 |
aatccattgttgaataattgatttgcagaattgattcttgctacacatgttctaccatctgggctgttttgggccaatgcatttggggtgcaacctattt |
226 |
Q |
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| T |
7615817 |
aatccgttgttaaataattggtttgcagaatttattctttcaacacaagtggtaccatctggactgttttgagctaattcatttggactgcaacctattt |
7615718 |
T |
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| Q |
227 |
gaccaactccaaataacgccattttccttgccccataattatataaaatctgaatcacaaacacaaaaatt |
297 |
Q |
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| T |
7615717 |
gaccaatcccaaataaagccattttccttgctccatagttatacaaaatctaagtcacaaacacaacaatt |
7615647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 293
Target Start/End: Original strand, 36361760 - 36362007
Alignment:
| Q |
46 |
tcttgaaagataccataaacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaagagatcttaatccattgttgaataatt |
145 |
Q |
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|||||||| ||||||||| |||||| || || | | ||| ||||||||| ||||| || | |||||||||||| | | ||| |||||||||| || |
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| T |
36361760 |
tcttgaaaaataccataagaatttacgtagataacttttgaatcaggaagctggttgttaaactgatcaacaagacctttcaatttgttgttgaatattt |
36361859 |
T |
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| Q |
146 |
gatttgcagaattgattcttgctacacatgttctaccatctgggctgttttgggccaatgcatttggggtgcaacctatttgaccaactccaaataacgc |
245 |
Q |
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| T |
36361860 |
ggtttgctgaattgatttcttccacacatgttacgccatctgcgctccttgtagccaattcatttgggctgcagcctatttgaccaatcccaaatagtac |
36361959 |
T |
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| Q |
246 |
cattttccttgccccataattatataaaatctgaatcacaaacacaaa |
293 |
Q |
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| T |
36361960 |
cattttccttgctccgttgttataaagagtctgaatcacaaatacaaa |
36362007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 402
Target Start/End: Original strand, 21723378 - 21723432
Alignment:
| Q |
348 |
tgacataatatgagccattagatcaattcattataacggttgatatttgatgtaa |
402 |
Q |
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| T |
21723378 |
tgacataatatgaactcttagatcaattaattacaacggttgagatttgatgtaa |
21723432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 1614432 - 1614469
Alignment:
| Q |
354 |
aatatgagccattagatcaattcattataacggttgat |
391 |
Q |
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| T |
1614432 |
aatatgagccattggatcaattaattataacggttgat |
1614469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0808 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0808
Description:
Target: scaffold0808; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 5012 - 5064
Alignment:
| Q |
350 |
acataatatgagccattagatcaattcattataacggttgatatttgatgtaa |
402 |
Q |
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|||||||||||| ||||||||||| | |||||||||||| | ||||| ||||| |
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| T |
5012 |
acataatatgagtcattagatcaaataattataacggttaagatttggtgtaa |
5064 |
T |
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