View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5555-Insertion-2 (Length: 187)
Name: NF5555-Insertion-2
Description: NF5555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5555-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 28685290 - 28685457
Alignment:
| Q |
8 |
ccttaaaaatatcatcctttgactttatgagattctcaagctccttcaacaaataagttagaaactgcttaaatcaagcttcttcagcaaatatgtcaaa |
107 |
Q |
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| T |
28685290 |
ccttaaaaatatcatcctttggctttatgagattctcaagctccttcaacaaataagtcaaaaactgcttaaatcaagcttcttcaataaataggtcaaa |
28685389 |
T |
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| Q |
108 |
aactacttaaattgtgttcaagtctagtgcaaatcgcgacataactgcgctggatcacgctacgattt |
175 |
Q |
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|||| |||||||||||||||| |||||||||||||||| ||||| ||| |||||||| ||||||||| |
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| T |
28685390 |
aactgcttaaattgtgttcaaatctagtgcaaatcgcgccataattgcattggatcacactacgattt |
28685457 |
T |
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