View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5555-Insertion-4 (Length: 875)

Name: NF5555-Insertion-4
Description: NF5555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5555-Insertion-4
NF5555-Insertion-4
[»] chr5 (25 HSPs)
chr5 (8-875)||(27105452-27106318)
chr5 (234-309)||(29588781-29588856)
chr5 (234-312)||(20982226-20982304)
chr5 (264-314)||(40048369-40048419)
chr5 (234-310)||(26516199-26516275)
chr5 (246-309)||(10391266-10391329)
chr5 (391-446)||(12407661-12407716)
chr5 (266-312)||(7096218-7096264)
chr5 (263-312)||(6739802-6739851)
chr5 (264-313)||(33459025-33459074)
chr5 (263-312)||(35135753-35135802)
chr5 (263-316)||(40097490-40097543)
chr5 (264-316)||(11835208-11835260)
chr5 (266-310)||(13224362-13224406)
chr5 (240-312)||(29115304-29115376)
chr5 (234-305)||(14714937-14715008)
chr5 (420-458)||(5377116-5377154)
chr5 (270-316)||(6593237-6593283)
chr5 (246-312)||(6738498-6738564)
chr5 (263-305)||(18704133-18704175)
chr5 (240-290)||(27104527-27104577)
chr5 (267-309)||(34117627-34117669)
chr5 (234-308)||(16945076-16945152)
chr5 (263-312)||(37063165-37063214)
chr5 (263-312)||(39128569-39128618)
[»] chr2 (33 HSPs)
chr2 (234-312)||(10143073-10143151)
chr2 (254-316)||(10150676-10150738)
chr2 (263-316)||(3673737-3673790)
chr2 (264-316)||(3611157-3611209)
chr2 (234-312)||(1939423-1939499)
chr2 (246-312)||(15173439-15173505)
chr2 (234-312)||(28803597-28803675)
chr2 (246-312)||(34339036-34339102)
chr2 (252-312)||(11344375-11344435)
chr2 (264-312)||(25609727-25609775)
chr2 (248-312)||(33197330-33197394)
chr2 (265-316)||(2416245-2416296)
chr2 (269-316)||(5133708-5133755)
chr2 (261-312)||(5511493-5511544)
chr2 (241-316)||(11393742-11393817)
chr2 (241-316)||(11410403-11410478)
chr2 (234-317)||(15171151-15171234)
chr2 (265-316)||(18962125-18962176)
chr2 (234-312)||(32098399-32098480)
chr2 (264-311)||(34054993-34055040)
chr2 (265-316)||(43199346-43199397)
chr2 (264-306)||(7936957-7936999)
chr2 (262-328)||(14277969-14278035)
chr2 (254-312)||(17952792-17952850)
chr2 (264-314)||(29629078-29629128)
chr2 (246-316)||(44600451-44600524)
chr2 (247-304)||(2400070-2400126)
chr2 (263-312)||(13864580-13864629)
chr2 (253-310)||(27288553-27288610)
chr2 (263-312)||(31461368-31461417)
chr2 (247-312)||(35755593-35755658)
chr2 (275-316)||(39567845-39567886)
chr2 (265-306)||(41033047-41033088)
[»] chr3 (26 HSPs)
chr3 (29-120)||(44633002-44633093)
chr3 (35-121)||(39410987-39411073)
chr3 (250-312)||(41159026-41159088)
chr3 (237-312)||(3015940-3016014)
chr3 (246-309)||(20173982-20174045)
chr3 (230-311)||(46759146-46759227)
chr3 (228-312)||(38462176-38462260)
chr3 (263-310)||(16790181-16790228)
chr3 (252-311)||(39971238-39971297)
chr3 (254-312)||(22214772-22214830)
chr3 (352-450)||(37273180-37273277)
chr3 (698-796)||(44632668-44632766)
chr3 (264-317)||(40240873-40240926)
chr3 (263-312)||(41028942-41028991)
chr3 (272-316)||(2128338-2128382)
chr3 (265-312)||(20192697-20192744)
chr3 (265-312)||(24605107-24605154)
chr3 (707-794)||(39411818-39411905)
chr3 (266-312)||(1395604-1395650)
chr3 (278-316)||(10101563-10101601)
chr3 (278-316)||(10212488-10212526)
chr3 (266-312)||(54775061-54775107)
chr3 (263-312)||(905061-905110)
chr3 (263-296)||(24624149-24624182)
chr3 (247-315)||(31364817-31364883)
chr3 (263-312)||(44374735-44374784)
[»] chr6 (22 HSPs)
chr6 (234-306)||(31461579-31461651)
chr6 (267-314)||(507154-507201)
chr6 (355-446)||(30865532-30865622)
chr6 (263-310)||(31670968-31671015)
chr6 (234-309)||(33068655-33068730)
chr6 (234-312)||(2206491-2206569)
chr6 (234-316)||(8349751-8349833)
chr6 (258-312)||(24836290-24836344)
chr6 (235-312)||(9027479-9027556)
chr6 (264-316)||(9559628-9559680)
chr6 (263-315)||(11340713-11340765)
chr6 (265-312)||(2514634-2514681)
chr6 (234-293)||(3737970-3738029)
chr6 (266-312)||(5328907-5328953)
chr6 (256-306)||(7148590-7148640)
chr6 (233-315)||(24332843-24332924)
chr6 (241-307)||(31668781-31668847)
chr6 (265-306)||(4247731-4247772)
chr6 (263-312)||(4248888-4248937)
chr6 (265-310)||(31672002-31672047)
chr6 (263-312)||(32975908-32975957)
chr6 (271-316)||(33736776-33736821)
[»] chr8 (25 HSPs)
chr8 (234-317)||(29699155-29699238)
chr8 (707-794)||(37602729-37602816)
chr8 (264-305)||(1561210-1561251)
chr8 (240-316)||(4558705-4558781)
chr8 (264-316)||(26215427-26215479)
chr8 (240-312)||(34563157-34563229)
chr8 (696-796)||(39882595-39882695)
chr8 (263-310)||(11188248-11188295)
chr8 (246-312)||(26716529-26716593)
chr8 (263-312)||(14482132-14482181)
chr8 (47-120)||(39882942-39883015)
chr8 (263-312)||(42597331-42597380)
chr8 (234-310)||(35869738-35869814)
chr8 (265-312)||(8823484-8823531)
chr8 (266-316)||(1112786-1112836)
chr8 (242-312)||(7026640-7026710)
chr8 (270-316)||(8407347-8407393)
chr8 (234-316)||(12972757-12972839)
chr8 (264-305)||(9928187-9928228)
chr8 (264-309)||(10114421-10114466)
chr8 (263-316)||(18356249-18356302)
chr8 (246-310)||(26813897-26813962)
chr8 (264-309)||(32506988-32507033)
chr8 (263-312)||(40280296-40280345)
chr8 (263-312)||(40728509-40728558)
[»] chr1 (25 HSPs)
chr1 (234-316)||(49557042-49557124)
chr1 (264-316)||(34619465-34619517)
chr1 (353-452)||(27140525-27140623)
chr1 (234-312)||(4200130-4200208)
chr1 (264-316)||(4549797-4549849)
chr1 (254-305)||(29046011-29046062)
chr1 (256-310)||(172264-172318)
chr1 (263-305)||(4202227-4202269)
chr1 (270-316)||(6976885-6976931)
chr1 (263-305)||(13037794-13037836)
chr1 (266-312)||(15360827-15360873)
chr1 (249-291)||(16980742-16980784)
chr1 (264-306)||(37818395-37818437)
chr1 (420-458)||(43722079-43722117)
chr1 (264-310)||(45769836-45769882)
chr1 (263-312)||(16982027-16982076)
chr1 (263-312)||(17269180-17269229)
chr1 (355-388)||(19389951-19389984)
chr1 (241-310)||(23895244-23895313)
chr1 (271-312)||(36641813-36641854)
chr1 (263-312)||(44032090-44032139)
chr1 (263-312)||(46499945-46499994)
chr1 (275-312)||(49517012-49517049)
chr1 (271-312)||(50319230-50319271)
chr1 (263-316)||(52286608-52286661)
[»] scaffold0100 (1 HSPs)
scaffold0100 (263-308)||(42547-42592)
[»] scaffold0590 (1 HSPs)
scaffold0590 (234-312)||(1165-1243)
[»] scaffold0275 (1 HSPs)
scaffold0275 (234-312)||(2732-2810)
[»] chr4 (28 HSPs)
chr4 (263-316)||(28623219-28623272)
chr4 (13-120)||(41125814-41125921)
chr4 (234-316)||(4471072-4471154)
chr4 (265-311)||(25717434-25717480)
chr4 (234-308)||(40709475-40709549)
chr4 (263-312)||(19422348-19422397)
chr4 (236-309)||(24936214-24936286)
chr4 (263-312)||(30024630-30024679)
chr4 (263-312)||(47970248-47970297)
chr4 (264-316)||(11389457-11389509)
chr4 (234-310)||(24443939-24444015)
chr4 (263-306)||(4191669-4191712)
chr4 (265-312)||(4798650-4798697)
chr4 (265-315)||(15511422-15511473)
chr4 (265-316)||(17884000-17884051)
chr4 (265-312)||(21593102-21593149)
chr4 (265-328)||(21683554-21683617)
chr4 (265-312)||(51044550-51044597)
chr4 (251-310)||(53943525-53943584)
chr4 (257-295)||(4663804-4663842)
chr4 (271-317)||(5131318-5131364)
chr4 (263-317)||(27671918-27671972)
chr4 (270-316)||(47946135-47946181)
chr4 (271-312)||(6364087-6364128)
chr4 (353-382)||(29263417-29263446)
chr4 (420-453)||(29376016-29376049)
chr4 (266-307)||(37636301-37636342)
chr4 (263-312)||(51555958-51556007)
[»] scaffold0024 (1 HSPs)
scaffold0024 (240-312)||(27483-27555)
[»] chr7 (25 HSPs)
chr7 (234-306)||(28844387-28844459)
chr7 (257-316)||(21853203-21853262)
chr7 (257-328)||(46081957-46082028)
chr7 (240-310)||(47528026-47528096)
chr7 (234-306)||(22388001-22388073)
chr7 (265-309)||(33894555-33894599)
chr7 (263-315)||(44241790-44241842)
chr7 (418-458)||(46281061-46281101)
chr7 (271-310)||(1432060-1432099)
chr7 (240-307)||(2013106-2013173)
chr7 (248-307)||(3610836-3610895)
chr7 (265-312)||(5373157-5373204)
chr7 (263-310)||(24973874-24973921)
chr7 (265-312)||(28165023-28165070)
chr7 (241-316)||(34440997-34441072)
chr7 (234-312)||(1431399-1431477)
chr7 (420-458)||(29363621-29363659)
chr7 (256-305)||(2223071-2223120)
chr7 (263-308)||(6552365-6552410)
chr7 (263-312)||(7244632-7244681)
chr7 (263-316)||(15328536-15328589)
chr7 (353-446)||(36598287-36598379)
chr7 (275-316)||(43152989-43153030)
chr7 (247-316)||(43328163-43328232)
chr7 (263-312)||(46213733-46213782)
[»] scaffold0549 (2 HSPs)
scaffold0549 (263-315)||(1812-1864)
scaffold0549 (263-315)||(3902-3954)
[»] scaffold0508 (1 HSPs)
scaffold0508 (263-317)||(9861-9915)


Alignment Details
Target: chr5 (Bit Score: 798; Significance: 0; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 8 - 875
Target Start/End: Complemental strand, 27106318 - 27105452
Alignment:
Q  8 gcatcgcaggtcctgctaacaccaacacatctagccattgtaatggagtacgctgctggaggagaactgtttgagaggatatgtagtgctggtagattta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27106318 gcatcgcaggtcctgctaacaccaacacatctagccattgtaatggagtacgctgctggaggagaactgtttgagaggatatgtagtgctggtagattta 27106219  T
Q  108 gtgaagatgaggtaatttcgaaactagagtttactatatgaaatattttatgtatttattctgtcttctgtaaagttgcccttttgatgaaaaggttgaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27106218 gtgaagatgaggtaatttcgaaactagagtttactatatgaaatattttatgtatttattctgtcttctgtaaagttgcccttttgatgaaaaggttgaa 27106119  T
Q  208 caaaggctctgttcggatacagttatttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaat 307  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  27106118 caaaggctctgttcggatacaggtatttaagtgcttacagcataaacacttattgtataagtgcttacgtataagtcatttctataacaaaagataaaat 27106019  T
Q  308 aaagttaaaagcgttttcataccagtcaaactagtttgaaataattgaaaacaacttatgaacatatcataagcttttttccgtaagctctctcaaaacg 407  Q
    |||||||||||||||||||||| |||| ||||| |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27106018 aaagttaaaagcgttttcatacaagtctaactattttgaaa--attgaaaacaacttatgaacatatcataagcttttttccataagctctctcaaaacg 27105921  T
Q  408 tctaacaatagtttatgttaatagataagttcaaataagccaatccgaacatgctcaaagtccatctcttactaattgtttctgttaagctcgtatagtc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27105920 tctaacaatagtttatgttaatagataagttcaaataagccaatccgaacatgctcaaagtccatctcttactaattgtttctgttaagctcgtatagtc 27105821  T
Q  508 -ttgttacattcataggttttggtccagtcattaatatttttctttatcaggcaaggtttttctttcagcaattgatatcaggagtcagttactgtcatt 606  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27105820 attgttacattcataggttttggttcagtcattaatatttttctttatcaggcaaggtttttctttcagcaattgatatcaggagtcagttactgtcatt 27105721  T
Q  607 caatggtacgaaactaaacaaaacttcaggacgaatcttcaaattgtatctttgcaatgaatagatattcttaataaaatgaagttttatgcagctaata 706  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27105720 caatggtacgaaactaaacaaaacttcatgacgaatcttcaaattgtatctttgcaatgaatagatattcttaataaaatgaagttttatgcagctaata 27105621  T
Q  707 tgccatagagatctgaagcttgaaaacacactcttagacggaagcactgcaccacgagttaaaatttgcgactttggttactcaaaggtaacatgttaac 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27105620 tgccatagagatctgaagcttgaaaacacactcttagacggaagcactgcaccacgagtcaaaatttgcgactttggttactcaaaggtaacatgttaac 27105521  T
Q  807 aaaagattactgctcaagaatccttttttcaagtgatgctcatttgtttttaccttgttctttagtcat 875  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27105520 aaaagattactgctccagaatccttttgtcaagtgatgctcatttgtttttaccatgttctttagtcat 27105452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 29588781 - 29588856
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataa 309  Q
    ||||| ||||| ||||||||||||| || ||||||||||||||||||||  ||||||||||| ||| |||||||||    
T  29588781 ttaagcgcttatagcataaacactttttatataagtgcttatgtataagctatttctataacaaaatataaaataa 29588856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 20982304 - 20982226
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||| |||||||   |||||  ||||||||||||||||||||  ||||||||||| || |||||||||||||    
T  20982304 ttaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagt 20982226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 40048419 - 40048369
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaagtta 314  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||||||||    
T  40048419 ataagtgcttatgtataagttgtttctataacaaaagataaaataaagtta 40048369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 26516199 - 26516275
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    ||||| ||||| ||||||| | |||||  ||||||||||||||||||||  ||||||| ||| ||||||||||||||    
T  26516199 ttaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 10391266 - 10391329
Alignment:
Q  246 agcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataa 309  Q
    |||||||||||||||  |||||||||||| |||||||  |||| |||||| |||||||||||||    
T  10391266 agcataaacacttatcatataagtgcttacgtataagctatttttataacaaaagataaaataa 10391329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 12407716 - 12407661
Alignment:
Q  391 taagctctctcaaaacgtctaacaatagtttatgttaatagataagttcaaataag 446  Q
    |||||||||||||| ||||| ||||  |||||||| ||||||||||||||||||||    
T  12407716 taagctctctcaaaccgtctcacaagtgtttatgtcaatagataagttcaaataag 12407661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 7096264 - 7096218
Alignment:
Q  266 aagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||||    
T  7096264 aagtgcttatgtataagctatttctataacaaaagataaaataaagt 7096218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 6739802 - 6739851
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||| | |||||||||||||||||||||||  ||||||||||||||||    
T  6739802 tataagcgtttatgtataagtcatttctataaataaagataaaataaagt 6739851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 33459074 - 33459025
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaagtt 313  Q
    |||| ||||||||||||||| ||||||||||| ||||| |||||||||||    
T  33459074 ataaatgcttatgtataagttatttctataacaaaagacaaaataaagtt 33459025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 35135802 - 35135753
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||| |||||||||||  ||||||||||| ||||||||||||||||    
T  35135802 tataagtgtttatgtataagatatttctataacaaaagataaaataaagt 35135753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 40097543 - 40097490
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||||| ||||||||||| |||||||||||  ||||||||||| |||||||    
T  40097543 tataagtgcgtatgtataagttatttctataacagaagataaaatagagttaaa 40097490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 11835208 - 11835260
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||| ||||||||||  ||||| |||||| ||||||||||||||||||||    
T  11835208 ataagtgtttatgtataaaccatttttataacaaaagataaaataaagttaaa 11835260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 13224362 - 13224406
Alignment:
Q  266 aagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||    
T  13224362 aagtgcttatgtataagctatttctataacaaaagataaaataaa 13224406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 29115376 - 29115304
Alignment:
Q  240 gcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||| |||||||||| ||||  || |||||||||||||||||  ||||||| ||| |||| |||||||||||    
T  29115376 gcttatagcataaacatttatcataaaagtgcttatgtataagctatttctacaacaaaaggtaaaataaagt 29115304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 14715008 - 14714937
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaa 305  Q
    |||||||||||  |||||||| ||| | ||||||||| |||||||||||  ||||||||||| ||| |||||    
T  14715008 ttaagtgcttatggcataaacgcttctcgtataagtgattatgtataagctatttctataacaaaacataaa 14714937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 420 - 458
Target Start/End: Complemental strand, 5377154 - 5377116
Alignment:
Q  420 ttatgttaatagataagttcaaataagccaatccgaaca 458  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  5377154 ttatgtcaatagataagctcaaataagccaatccgaaca 5377116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 6593237 - 6593283
Alignment:
Q  270 gcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||||||||   ||||||||||| ||||||||||||||||||||    
T  6593237 gcttatgtataaacaatttctataacaaaagataaaataaagttaaa 6593283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 6738564 - 6738498
Alignment:
Q  246 agcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||||||||||  ||||||| ||||||||||||  ||||| ||||  ||||| ||||||||||    
T  6738564 agcataaacacttatcatataagtacttatgtataagctatttcaataataaaagacaaaataaagt 6738498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 18704175 - 18704133
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaa 305  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||    
T  18704175 tataagttcttatgtataagttatttctataacaaaagataaa 18704133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 27104577 - 27104527
Alignment:
Q  240 gcttacagcataaacacttattgtataagtgcttatgtataagtcatttct 290  Q
    ||||| |||||||||||||||  |||||||||||| |||||||| ||||||    
T  27104577 gcttatagcataaacacttatcatataagtgcttacgtataagttatttct 27104527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 34117669 - 34117627
Alignment:
Q  267 agtgcttatgtataagtcatttctataacgaaagataaaataa 309  Q
    ||||||||||||||||| |||||| |||| |||||||||||||    
T  34117669 agtgcttatgtataagttatttctttaacaaaagataaaataa 34117627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 16945152 - 16945076
Alignment:
Q  234 ttaagtgcttacagcataaacacttat--tgtataagtgcttatgtataagtcatttctataacgaaagataaaata 308  Q
    ||||||| ||| ||||||||  |||||  ||||||||||||||||||||||  ||||||| ||  ||||||||||||    
T  16945152 ttaagtgtttatagcataaaagcttatcatgtataagtgcttatgtataagctatttctacaagaaaagataaaata 16945076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 37063214 - 37063165
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||| |||||||||||||   ||||||||||| ||||||||||||||||    
T  37063214 tataaatgcttatgtataaactatttctataacaaaagataaaataaagt 37063165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 39128569 - 39128618
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||| |||||||||||||||  | ||||||||| ||||||||||||||||    
T  39128569 tatatgtgcttatgtataagctaattctataacaaaagataaaataaagt 39128618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 10143073 - 10143151
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||||||||||| ||| |||||| | |||||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  10143073 ttaagtgcttacagcacaaaaacttatcgaataagtgcttatgtataagttatttctataacaaaagataaaattaagt 10143151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 10150676 - 10150738
Alignment:
Q  254 cacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||||||| |||||||| |||||||||||| ||||||||||  ||||||||||||| ||||||    
T  10150676 cacttattatataagtgtttatgtataagttatttctataataaaagataaaataacgttaaa 10150738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 3673737 - 3673790
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||||||||||||| ||| ||||||||||| ||| ||||||||||||||||    
T  3673737 tataagtgcttatgtattagttatttctataacaaaatataaaataaagttaaa 3673790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 3611157 - 3611209
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||||||||||||||||||| ||||||||| | |||| |||||||||||||||    
T  3611157 ataagtgcttatgtataagttatttctatagcaaaaggtaaaataaagttaaa 3611209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 1939499 - 1939423
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||| | |||||||||| ||||| |||||| || |||  |||||| ||||||||||| ||||||||||||||||    
T  1939499 ttaagtgctcatagcataaacaattattttataagcgcatat--ataagttatttctataacaaaagataaaataaagt 1939423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 15173439 - 15173505
Alignment:
Q  246 agcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||| ||||| ||| |||||  ||||||||||| ||||||||||| |||||| |||||||||    
T  15173439 agcataaacgcttatcgtacaagtgtctatgtataagttatttctataacaaaagatgaaataaagt 15173505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 28803675 - 28803597
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||| |||  |||||||  |||||  ||||||||||||| ||||||| ||||| ||||| ||||||||||||||||    
T  28803675 ttaagtgtttatggcataaatgcttatcatataagtgcttatatataagttatttcgataacaaaagataaaataaagt 28803597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 34339036 - 34339102
Alignment:
Q  246 agcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||||||||||  |||||||||||||||||||    |||||||| | ||||||||||||||||    
T  34339036 agcataaacacttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaagt 34339102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 11344435 - 11344375
Alignment:
Q  252 aacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||| || |||||||||||||| |||||  ||||||||||| |||||||||| |||||    
T  11344435 aacacttgttatataagtgcttatgcataagatatttctataacaaaagataaaagaaagt 11344375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 25609727 - 25609775
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||||||||||||||  ||||||||||  ||||||||||||||||    
T  25609727 ataagtgcttatgtataagctatttctataagaaaagataaaataaagt 25609775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 33197394 - 33197330
Alignment:
Q  248 cataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||| |||||  ||||||||||||| ||||||  ||||||||||| ||||||| ||||||||    
T  33197394 cataaacgcttatcatataagtgcttatctataagctatttctataacaaaagatagaataaagt 33197330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 2416245 - 2416296
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||||||||||||||| |||||| || | ||||||||||| ||||||||    
T  2416245 taagtgcttatgtataagttatttctgtagcaaaagataaaatgaagttaaa 2416296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 5133708 - 5133755
Alignment:
Q  269 tgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||||||||||  ||||||||||| ||||||||||||||| ||||    
T  5133708 tgcttatgtataagctatttctataacaaaagataaaataaagataaa 5133755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 5511493 - 5511544
Alignment:
Q  261 tgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||| ||||||| ||||||||| |||||||||| |||| ||||||||||||    
T  5511493 tgtatcagtgcttctgtataagttatttctataatgaaatataaaataaagt 5511544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 11393817 - 11393742
Alignment:
Q  241 cttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||| |||||||||| ||||  | ||||||||||||||||||  ||||||||| | ||||||| ||||||| ||||    
T  11393817 cttatagcataaacatttatcatttaagtgcttatgtataagctatttctataccaaaagatacaataaagctaaa 11393742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 11410478 - 11410403
Alignment:
Q  241 cttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||| |||||||||| ||||  | ||||||||||||||||||  ||||||||| | ||||||| ||||||| ||||    
T  11410478 cttatagcataaacatttatcatttaagtgcttatgtataagctatttctataccaaaagatacaataaagctaaa 11410403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 15171151 - 15171234
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaaa 317  Q
    ||||||| ||| ||||||| | | |||| |||||||| ||||||||||||  ||||||||||  |||||||| |||||| ||||    
T  15171151 ttaagtgtttatagcataagctcgtattttataagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaa 15171234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 18962176 - 18962125
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||||||||||| ||  |||| |||||| ||||||||||||||||||||    
T  18962176 taagtgcttatgtattagctatttttataacaaaagataaaataaagttaaa 18962125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 32098480 - 32098399
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtata---agtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||| |||||||||| ||||  ||||   | ||||||| ||||||  ||||||||||| ||||||||||||||||    
T  32098480 ttaagtgcttatagcataaacagttatcatatactaaatgcttatatataagctatttctataacaaaagataaaataaagt 32098399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 34055040 - 34054993
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaag 311  Q
    ||||||||||||||||| |  ||||||||||| |||||||||||||||    
T  34055040 ataagtgcttatgtataggctatttctataacaaaagataaaataaag 34054993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 43199346 - 43199397
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||| |||| ||||||||| ||||||| ||| ||||||||||||||||||||    
T  43199346 taagcgcttctgtataagttatttctacaacaaaagataaaataaagttaaa 43199397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 7936957 - 7936999
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaa 306  Q
    ||||||||||||||||||  |||||||||||| ||||||||||    
T  7936957 ataagtgcttatgtataaaccatttctataacaaaagataaaa 7936999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 14278035 - 14277969
Alignment:
Q  262 gtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaaagcgttttcata 328  Q
    ||||||||||||||||||||   ||||||||||| ||| || ||||||||| ||||  |||||||||    
T  14278035 gtataagtgcttatgtataaactatttctataactaaacattaaataaagtcaaaactgttttcata 14277969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 17952850 - 17952792
Alignment:
Q  254 cacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||  |||||| |||||| ||||||  ||||||||||| ||||||||||||||||    
T  17952850 cacttatcatataagagcttatatataagctatttctataacaaaagataaaataaagt 17952792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 29629128 - 29629078
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaagtta 314  Q
    ||||||||||||||||| || |||||| | || ||||||||||||||||||    
T  29629128 ataagtgcttatgtatatgttatttctgtgacaaaagataaaataaagtta 29629078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 44600451 - 44600524
Alignment:
Q  246 agcataaacacttattgt-ataagtgcttatgtataagtcatttctataac--gaaagataaaataaagttaaa 316  Q
    |||||| |||||||| || |||||||||||||||||||  ||||||||| |   ||||||||||||||||||||    
T  44600451 agcatagacacttatcgtgataagtgcttatgtataagctatttctatagccaaaaagataaaataaagttaaa 44600524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 2400070 - 2400126
Alignment:
Q  247 gcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataa 304  Q
    ||||||||| ||||  |||||||||||||||||||||  |||||||||| ||||||||    
T  2400070 gcataaacaattatcatataagtgcttatgtataagttgtttctataac-aaagataa 2400126  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 13864580 - 13864629
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||| |||||||||||  ||||||||||| |||| |||||||||||    
T  13864580 tataagtgtttatgtataagctatttctataacaaaaggtaaaataaagt 13864629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 27288553 - 27288610
Alignment:
Q  253 acacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    ||||||||  |||||||||||||||| ||||  |||||||||  ||||||||||||||    
T  27288553 acacttatcctataagtgcttatgtaaaagttgtttctataataaaagataaaataaa 27288610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 31461368 - 31461417
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||| |||| ||||||  ||||||||||| ||||||||||||||||    
T  31461368 tataagtggttatatataagctatttctataacaaaagataaaataaagt 31461417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 35755658 - 35755593
Alignment:
Q  247 gcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||||||| | ||||||||| |||||||||||  ||||||||||  ||| | ||||||||||    
T  35755658 gcataaacacttgtcgtataagtgtttatgtataagctatttctataatcaaatagaaaataaagt 35755593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 39567845 - 39567886
Alignment:
Q  275 tgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||||  ||||||||||| ||||||||||||||||||||    
T  39567845 tgtataagatatttctataacaaaagataaaataaagttaaa 39567886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 41033088 - 41033047
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaa 306  Q
    ||||||||||||||||||  ||||||||||| ||||||||||    
T  41033088 taagtgcttatgtataagctatttctataacaaaagataaaa 41033047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 44633093 - 44633002
Alignment:
Q  29 ccaacacatctagccattgtaatggagtacgctgctggaggagaactgtttgagaggatatgtagtgctggtagatttagtgaagatgaggt 120  Q
    ||||||||| |||| ||||| |||||||| || |||||||||||||| |||||||||||||| | |||||| || || ||||||||||||||    
T  44633093 ccaacacatttagcaattgtgatggagtatgcagctggaggagaactctttgagaggatatgcaatgctggcaggttcagtgaagatgaggt 44633002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 39410987 - 39411073
Alignment:
Q  35 catctagccattgtaatggagtacgctgctggaggagaactgtttgagaggatatgtagtgctggtagatttagtgaagatgaggta 121  Q
    |||||||| || || |||||||| ||||| ||||||||||| ||||| || ||||| ||||||||||||||| ||||||| ||||||    
T  39410987 catctagctatagtgatggagtatgctgcaggaggagaactatttgaaagaatatgcagtgctggtagattttgtgaagacgaggta 39411073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 41159026 - 41159088
Alignment:
Q  250 taaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||| ||||| |||||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  41159026 taaacgcttatcgtataagtgcttatgtataagttattcctataactaaagataaaataaagt 41159088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 3016014 - 3015940
Alignment:
Q  237 agtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||| | |||||||||||||| ||||||||||||||||| | | ||||||||||| ||||||||||| ||||    
T  3016014 agtgcttataacataaacacttattatataagtgcttatgtattaattatttctataac-aaagataaaatgaagt 3015940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 20174045 - 20173982
Alignment:
Q  246 agcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataa 309  Q
    ||||||||||||  || ||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  20174045 agcataaacactagttatataagtgcttatgtattagttatttctataacaaaagataaaataa 20173982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 46759227 - 46759146
Alignment:
Q  230 ttatttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaag 311  Q
    ||||||||| ||| |||||||||||||||||  | ||||||||||||||||||   |||| ||||| | |||||||||||||    
T  46759227 ttatttaagcgctaacagcataaacacttatcatttaagtgcttatgtataaggtgtttcaataacaatagataaaataaag 46759146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 38462176 - 38462260
Alignment:
Q  228 agttatttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||| ||||| || || |||||||||||||||  |||||||| |||| ||||||  ||||||||| | ||||||||||||||||    
T  38462176 agttaattaagcgcctaaagcataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagt 38462260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 16790228 - 16790181
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  16790228 tataagtgcttatatataagttatttctataacaaaagataaaataaa 16790181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 39971238 - 39971297
Alignment:
Q  252 aacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaag 311  Q
    |||||||||  ||||||||||||||||||||| | || |||||| |||||||||||||||    
T  39971238 aacacttatcatataagtgcttatgtataagttacttatataacaaaagataaaataaag 39971297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 22214830 - 22214772
Alignment:
Q  254 cacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||| |||||||||| ||||||||| | ||||||||||| || |||||||||||||    
T  22214830 cacttatcgtataagtgcgtatgtataaattatttctataacaaaggataaaataaagt 22214772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 352 - 450
Target Start/End: Original strand, 37273180 - 37273277
Alignment:
Q  352 ttgaaaacaacttatgaacatatcataagcttttttccgtaagctctctcaaaacgtctaacaatagtttatgttaatagataagttcaaataagccaa 450  Q
    |||||||||||||||| |||| ||||||| || ||||| ||||||||| ||||  |||| || |  | ||||| ||||| |||||||||||||||||||    
T  37273180 ttgaaaacaacttatggacatgtcataag-ttgtttccataagctctcccaaacagtctcaccagtgcttatgctaataaataagttcaaataagccaa 37273277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 698 - 796
Target Start/End: Complemental strand, 44632766 - 44632668
Alignment:
Q  698 cagctaatatgccatagagatctgaagcttgaaaacacactcttagacggaagcactgcaccacgagttaaaatttgcgactttggttactcaaaggta 796  Q
    |||| |||||||||||||||||||||||| || || || || ||||| |||||  ||||||| ||  | |||||||| ||||||||||| || ||||||    
T  44632766 cagcaaatatgccatagagatctgaagctagagaatacccttttagatggaagtcctgcaccccgcttaaaaatttgtgactttggttattcgaaggta 44632668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 40240926 - 40240873
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaaa 317  Q
    ||||| |||||||||||||||||||| | ||| ||||||||||| |||||||||    
T  40240926 ataagcgcttatgtataagtcatttccacaaccaaagataaaatcaagttaaaa 40240873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 41028991 - 41028942
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||||||||||||  ||||||||||| ||||| ||||||||||    
T  41028991 tataagtgcttatgtataagctatttctataacaaaagaaaaaataaagt 41028942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 2128382 - 2128338
Alignment:
Q  272 ttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||||||||||  ||||||||||| ||||||||||||||||||||    
T  2128382 ttatgtataagctatttctataacaaaagataaaataaagttaaa 2128338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 20192744 - 20192697
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||||||||||  |||| |||||| ||||||||||||||||    
T  20192744 taagtgcttatgtataagctatttatataacaaaagataaaataaagt 20192697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 24605154 - 24605107
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||| |||||||||||| ||||||||||| |||||| |||||||||    
T  24605154 taagtgtttatgtataagttatttctataacaaaagatgaaataaagt 24605107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 707 - 794
Target Start/End: Original strand, 39411818 - 39411905
Alignment:
Q  707 tgccatagagatctgaagcttgaaaacacactcttagacggaagcactgcaccacgagttaaaatttgcgactttggttactcaaagg 794  Q
    |||||||||||||| || || ||||| ||||| ||||| |||||| || |||||| | | ||||| || |||||||||||||| ||||    
T  39411818 tgccatagagatcttaaactggaaaatacacttttagatggaagctcttcaccacaactcaaaatatgtgactttggttactccaagg 39411905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 1395604 - 1395650
Alignment:
Q  266 aagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||| ||||||||||  ||||||||||| ||||||||||||||||    
T  1395604 aagtgcatatgtataagctatttctataacaaaagataaaataaagt 1395650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 10101601 - 10101563
Alignment:
Q  278 ataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  10101601 ataagttatttctataacaaaagataaaataaagttaaa 10101563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 10212526 - 10212488
Alignment:
Q  278 ataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  10212526 ataagttatttctataacaaaagataaaataaagttaaa 10212488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 54775061 - 54775107
Alignment:
Q  266 aagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||| || ||||| ||||||||||| ||||||||||||||||    
T  54775061 aagtgcttacgtttaagttatttctataacaaaagataaaataaagt 54775107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 905110 - 905061
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||| ||||| |||||||  ||||||||||| ||||||||||||||||    
T  905110 tataagcgcttaagtataagctatttctataacaaaagataaaataaagt 905061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 24624149 - 24624182
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacg 296  Q
    |||| |||||||||||||||||||||||||||||    
T  24624149 tatacgtgcttatgtataagtcatttctataacg 24624182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 31364817 - 31364883
Alignment:
Q  247 gcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaa 315  Q
    |||||||||||||  ||||||||||| || ||||||  |||| |||||| |||| ||||||||||||||    
T  31364817 gcataaacactta--gtataagtgctaatatataagctatttttataacaaaaggtaaaataaagttaa 31364883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 44374784 - 44374735
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||||||||||||  || ||| |||| ||||||||||||||||    
T  44374784 tataagtgcttatgtataagctatatctttaacaaaagataaaataaagt 44374735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 31461579 - 31461651
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaa 306  Q
    ||||||||||| |  |||| |||||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  31461579 ttaagtgcttatattataagcacttattgtataagtgcttatgtataagctatttctataacaaaagataaaa 31461651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 507154 - 507201
Alignment:
Q  267 agtgcttatgtataagtcatttctataacgaaagataaaataaagtta 314  Q
    ||||||||||||||| | ||||||||||| ||||||||||||||||||    
T  507154 agtgcttatgtataaattatttctataacaaaagataaaataaagtta 507201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 355 - 446
Target Start/End: Original strand, 30865532 - 30865622
Alignment:
Q  355 aaaacaacttatgaacatatcataagcttttttccgtaagctctctcaaaacgtctaacaatagtttatgttaatagataagttcaaataag 446  Q
    |||||||||| ||| ||| ||||||| || ||||| |||||||||| |||  |||||||||  ||||||||||| ||||||| |||||||||    
T  30865532 aaaacaacttttgatcatgtcataag-ttatttccataagctctcttaaactgtctaacaagtgtttatgttaacagataagctcaaataag 30865622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 31671015 - 31670968
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  31671015 tataagtgcttatatataagtcatttctataacaatagataaaataaa 31670968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 33068730 - 33068655
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataa 309  Q
    ||||||| ||| ||||||| | |||||   |||| ||||||||||||||| ||||||||||| |||||||||||||    
T  33068730 ttaagtgtttatagcataagcgcttatcaaataaatgcttatgtataagttatttctataacaaaagataaaataa 33068655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 2206491 - 2206569
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||| ||||||| | ||||| |||||||   || ||||||||| |||| |||||| ||||||||||||||||    
T  2206491 ttaagtgcttatagcataagctcttatcgtataagcatttctgtataagttatttttataacaaaagataaaataaagt 2206569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 8349833 - 8349751
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||| ||||| ||||||| |||||||  |||||||| || |||||||   |||||| |||| ||||||||||||||||||||    
T  8349833 ttaagcgcttatagcataaccacttatcatataagtgtttgtgtataaactatttctctaacaaaagataaaataaagttaaa 8349751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 24836344 - 24836290
Alignment:
Q  258 tattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||| |||||||  |||||||||||| ||||||||||| ||||||||||||||||    
T  24836344 tattatataagtatttatgtataagttatttctataacaaaagataaaataaagt 24836290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 9027479 - 9027556
Alignment:
Q  235 taagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||| ||||| ||||| |||||||||| ||||||||||||| ||||||  ||||||| ||   |||||||||||||||    
T  9027479 taagcgcttatagcatgaacacttattatataagtgcttatctataagctatttctacaatagaagataaaataaagt 9027556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 9559680 - 9559628
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||| |||||||||||||| ||||||||| | |||||||||||||| |||||    
T  9559680 ataagcgcttatgtataagttatttctatagcaaaagataaaataaatttaaa 9559628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 11340765 - 11340713
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaa 315  Q
    ||||||||||||| ||||||  | ||||||||| |||||||||||||||||||    
T  11340765 tataagtgcttatatataagataattctataacaaaagataaaataaagttaa 11340713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 2514634 - 2514681
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||||||||||  ||||||||||  ||||||||||||||||    
T  2514634 taagtgcttatgtataagctatttctataataaaagataaaataaagt 2514681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 3737970 - 3738029
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctata 293  Q
    ||||| ||||| ||| ||||||||||| |||| ||||||||||||||||  |||||||||    
T  3737970 ttaagcgcttatagcgtaaacacttatcgtatgagtgcttatgtataagctatttctata 3738029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 5328907 - 5328953
Alignment:
Q  266 aagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||| || ||||| ||||||||||| ||||||||||||||||    
T  5328907 aagtgcttacgtttaagttatttctataacaaaagataaaataaagt 5328953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 7148590 - 7148640
Alignment:
Q  256 cttattgtataagtgcttatgtataagtcatttctataacgaaagataaaa 306  Q
    |||||| ||||||||||||||||||||  ||||||| ||| ||||||||||    
T  7148590 cttattatataagtgcttatgtataagctatttctacaactaaagataaaa 7148640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 24332843 - 24332924
Alignment:
Q  233 tttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaa 315  Q
    |||||| ||||  ||||||| |||||||  |||||||| |||||||||||  |||||| |||  |||||||||||||||||||    
T  24332843 tttaagcgcttggagcataagcacttatcctataagtgattatgtataagctatttctttaa-aaaagataaaataaagttaa 24332924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 31668847 - 31668781
Alignment:
Q  241 cttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaat 307  Q
    |||| ||||||| || ||||  ||||||||||||||||||||  ||||||||||| ||| |||||||    
T  31668847 cttatagcataagcaattatcatataagtgcttatgtataagctatttctataacaaaacataaaat 31668781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 4247772 - 4247731
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaa 306  Q
    ||||||||||||||||||  ||||||||||| ||||||||||    
T  4247772 taagtgcttatgtataagctatttctataacaaaagataaaa 4247731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 4248888 - 4248937
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||||| ||||||  ||||| ||||| ||||||||||||||||    
T  4248888 tataagtgcttatatataagctatttcaataacaaaagataaaataaagt 4248937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 31672002 - 31672047
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    |||| |||| ||||||||| ||||||||||| ||||||||||||||    
T  31672002 taagcgcttctgtataagttatttctataacaaaagataaaataaa 31672047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 32975908 - 32975957
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||| |||||||||||| |||||| |||| ||| ||||||||||||    
T  32975908 tataagtgtttatgtataagttatttctgtaacaaaatataaaataaagt 32975957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 33736776 - 33736821
Alignment:
Q  271 cttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||||||||| |||||||||||  || ||||||||||||||||    
T  33736776 cttatgtataagttatttctataacataacataaaataaagttaaa 33736821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 29699155 - 29699238
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaaa 317  Q
    ||||||||||| |||||||| | ||||  ||||| |||||||||| |||| ||||||||||| |||||||||||||||| ||||    
T  29699155 ttaagtgcttatagcataaatatttatcatataaatgcttatgtacaagttatttctataacaaaagataaaataaagtcaaaa 29699238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 707 - 794
Target Start/End: Original strand, 37602729 - 37602816
Alignment:
Q  707 tgccatagagatctgaagcttgaaaacacactcttagacggaagcactgcaccacgagttaaaatttgcgactttggttactcaaagg 794  Q
    |||||||||||||| ||||| |||||||||||  |||| |||||  | ||||||||| | ||||| || |||||||||||||||||||    
T  37602729 tgccatagagatcttaagctagaaaacacacttctagatggaagtccagcaccacgactcaaaatatgtgactttggttactcaaagg 37602816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 1561210 - 1561251
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaa 305  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  1561210 ataagtgcttatgtataagttatttctataacgaaagataaa 1561251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 4558705 - 4558781
Alignment:
Q  240 gcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||| |||||||||  ||||| | |||||| |||||||||||  ||||||||||  ||||||||||||||||||||    
T  4558705 gcttatagcataaacgtttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagttaaa 4558781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 26215427 - 26215479
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||| |||||||||||||  ||||||||||| ||||||||||||||||||||    
T  26215427 ataagcgcttatgtataagctatttctataacaaaagataaaataaagttaaa 26215479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 34563157 - 34563229
Alignment:
Q  240 gcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||| |||||||||| ||||  ||||||||||||| ||||||| |||||||| || || |||||||||||||    
T  34563157 gcttatagcataaacatttatcatataagtgcttatatataagttatttctatgacaaaggataaaataaagt 34563229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 696 - 796
Target Start/End: Complemental strand, 39882695 - 39882595
Alignment:
Q  696 tgcagctaatatgccatagagatctgaagcttgaaaacacactcttagacggaagcactgcaccacgagttaaaatttgcgactttggttactcaaaggt 795  Q
    |||||| |||||| || |||||| ||||||| ||||| ||||| ||||| |||||| ||||||| ||  | |||||||| ||||||||||| || |||||    
T  39882695 tgcagcaaatatgtcacagagatttgaagctggaaaatacacttttagatggaagccctgcacctcgcttgaaaatttgtgactttggttattccaaggt 39882596  T
Q  796 a 796  Q
    |    
T  39882595 a 39882595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 11188295 - 11188248
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||    
T  11188295 tataagtgcttatgtataagttgtttctataacaaaagataaaataaa 11188248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 26716593 - 26716529
Alignment:
Q  246 agcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||||||||||| ||||||||||||||||||||  | |||||||||  ||||| |||||||||    
T  26716593 agcataaacacttattatataagtgcttatgtataagctacttctataac--aagattaaataaagt 26716529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 14482132 - 14482181
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||||||||||||||   ||||||||||| ||||||||||||||||    
T  14482132 tataagtgcttatgtataaactatttctataacaaaagataaaataaagt 14482181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 39883015 - 39882942
Alignment:
Q  47 gtaatggagtacgctgctggaggagaactgtttgagaggatatgtagtgctggtagatttagtgaagatgaggt 120  Q
    ||||||||||| || |||||||| ||||| ||||||||||| |||| ||||||| | || || |||||||||||    
T  39883015 gtaatggagtatgcagctggaggggaactctttgagaggatctgtaatgctggtcggttcagcgaagatgaggt 39882942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 42597331 - 42597380
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||| ||||||||||||  ||||||||||| ||||||||||||||||    
T  42597331 tataagtacttatgtataagctatttctataacaaaagataaaataaagt 42597380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 35869738 - 35869814
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    ||||| ||||| ||||||| |||||||  ||||||| ||||||||||||  ||||||| ||| ||| ||||||||||    
T  35869738 ttaagcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaa 35869814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 8823531 - 8823484
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||| |||||| |||||||||||| |||||||||| |||||    
T  8823531 taagtgcttatatataagccatttctataacaaaagataaaacaaagt 8823484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 1112786 - 1112836
Alignment:
Q  266 aagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||||||||||| |  ||||||||||| ||||||||||||| ||||||    
T  1112786 aagtgcttatgtatatgctatttctataacaaaagataaaataaggttaaa 1112836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 7026640 - 7026710
Alignment:
Q  242 ttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||||||||| ||||  |||||||||||||| |||||  | |  |||||| ||||||||||||||||    
T  7026640 ttacagcataaacatttatcatataagtgcttatgcataagctactgttataacaaaagataaaataaagt 7026710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 8407347 - 8407393
Alignment:
Q  270 gcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||| |||||||||||||||||  | ||||||||||||||||||||    
T  8407347 gcttacgtataagtcatttctatgccaaaagataaaataaagttaaa 8407393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 12972757 - 12972839
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||| ||||| ||||||| || ||||  ||||||||||||||||||||  ||||| |||||  ||||| ||||||| |||||    
T  12972757 ttaagcgcttatagcataagcatttatcatataagtgcttatgtataagctatttcaataacagaagatgaaataaaattaaa 12972839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 9928187 - 9928228
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaa 305  Q
    ||||||| |||||||||||| ||||||||||| |||||||||    
T  9928187 ataagtgtttatgtataagttatttctataacaaaagataaa 9928228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 10114421 - 10114466
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataa 309  Q
    |||||||||||||||||||  ||||||||| | |||||||||||||    
T  10114421 ataagtgcttatgtataagctatttctatagcaaaagataaaataa 10114466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 18356249 - 18356302
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||| ||||||||| |||||  |||||||| | ||||||||||||||||||||    
T  18356249 tataattgcttatgtgtaagttgtttctatagcaaaagataaaataaagttaaa 18356302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 26813962 - 26813897
Alignment:
Q  246 agcataaacacttattgtataagtgcttatgtataagtcatttctataac-gaaagataaaataaa 310  Q
    |||| ||| ||||||  ||||||||||||||||||| | |||||||||||  ||||||||||||||    
T  26813962 agcacaaaaacttatcatataagtgcttatgtataaattatttctataacaaaaagataaaataaa 26813897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 32506988 - 32507033
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataa 309  Q
    ||||||| |||||||||||| ||||||| ||| |||||||||||||    
T  32506988 ataagtgtttatgtataagttatttctacaacaaaagataaaataa 32507033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 40280345 - 40280296
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||| ||| ||||||| ||||||| ||| ||||||||||||||||    
T  40280345 tataagtgcctatatataagttatttctacaacaaaagataaaataaagt 40280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 40728558 - 40728509
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||| | ||| |||||| ||||||||||| ||||||||||||||||    
T  40728558 tataagtgttcatgcataagttatttctataacaaaagataaaataaagt 40728509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 49557042 - 49557124
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||||||| | | ||| |||||||  ||||||||||  ||||||||| ||||||||||| ||||||||||||||||||||    
T  49557042 ttaagtgcttataacgtaatcacttatcatataagtgctgctgtataagttatttctataacaaaagataaaataaagttaaa 49557124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 34619517 - 34619465
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  34619517 ataattgcttatgtataagccatttctataacaaaagataaaataaggttaaa 34619465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 353 - 452
Target Start/End: Original strand, 27140525 - 27140623
Alignment:
Q  353 tgaaaacaacttatgaacatatcataagcttttttccgtaagctctctcaaaacgtctaacaatagtttatgttaatagataagttcaaataagccaatc 452  Q
    ||||||||||||||| |||| |||||||| | ||||| ||| ||||||||||  | || ||||| |||||||| |||||||||| ||| ||||| |||||    
T  27140525 tgaaaacaacttatggacatgtcataagc-tgtttccttaaactctctcaaagagacttacaattgtttatgtcaatagataagctcatataagtcaatc 27140623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 4200130 - 4200208
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||| || ||||||| |||||||  | |||||| |||| ||||||| |||| |||||| ||||||||||||||||    
T  4200130 ttaagtgcgtatagcataagcacttatcatctaagtgtttatatataagttatttttataacaaaagataaaataaagt 4200208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 4549797 - 4549849
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||| |||||||||| |||  ||||||||||| ||||||||||||||||||||    
T  4549797 ataaatgcttatgtacaagctatttctataacaaaagataaaataaagttaaa 4549849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 29046062 - 29046011
Alignment:
Q  254 cacttattgtataagtgcttatgtataagtcatttctataacgaaagataaa 305  Q
    ||||||| |||||||||||| ||||||||  ||||||||||| |||||||||    
T  29046062 cacttatcgtataagtgcttgtgtataagatatttctataacaaaagataaa 29046011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 172264 - 172318
Alignment:
Q  256 cttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    ||||| |||| | ||||||||||||||  ||||||||||| ||||||||||||||    
T  172264 cttatcgtattattgcttatgtataagctatttctataactaaagataaaataaa 172318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 4202269 - 4202227
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaa 305  Q
    |||||||||||| |||||||| ||||||||||| |||||||||    
T  4202269 tataagtgcttaagtataagttatttctataacaaaagataaa 4202227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 6976885 - 6976931
Alignment:
Q  270 gcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||||||||||||  ||||||||||| |||||||| |||||||||||    
T  6976885 gcttatgtataagatatttctataacaaaagataagataaagttaaa 6976931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 13037794 - 13037836
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaa 305  Q
    ||||||||||||||||||||  ||||||||||| |||||||||    
T  13037794 tataagtgcttatgtataagctatttctataacaaaagataaa 13037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 15360827 - 15360873
Alignment:
Q  266 aagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||| |||||||| ||| ||||||||||| ||||||||||||||||    
T  15360827 aagtgtttatgtattagttatttctataacaaaagataaaataaagt 15360873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 16980742 - 16980784
Alignment:
Q  249 ataaacacttattgtataagtgcttatgtataagtcatttcta 291  Q
    ||||| ||||||  |||||||||||||||||||||||||||||    
T  16980742 ataaatacttatcatataagtgcttatgtataagtcatttcta 16980784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 37818395 - 37818437
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaa 306  Q
    |||||||||||||||||||| ||||||||||| | ||||||||    
T  37818395 ataagtgcttatgtataagttatttctataacaagagataaaa 37818437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 420 - 458
Target Start/End: Complemental strand, 43722117 - 43722079
Alignment:
Q  420 ttatgttaatagataagttcaaataagccaatccgaaca 458  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  43722117 ttatgttaatagataagttcaaattagccaatccaaaca 43722079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 45769882 - 45769836
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    |||||||||||||| ||| | ||||||||||| ||||||||||||||    
T  45769882 ataagtgcttatgtgtaaattatttctataacaaaagataaaataaa 45769836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 16982076 - 16982027
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||| |||||||||| | ||||| ||||| ||||||||||||||||    
T  16982076 tataagtgtttatgtataacttatttcgataacaaaagataaaataaagt 16982027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 17269180 - 17269229
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||||||||||||| ||||||| ||| ||||  ||||||||||    
T  17269180 tataagtgcttatgtataagttatttctagaacaaaagtgaaaataaagt 17269229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 355 - 388
Target Start/End: Original strand, 19389951 - 19389984
Alignment:
Q  355 aaaacaacttatgaacatatcataagcttttttc 388  Q
    |||||||||||||||||||||||||| |||||||    
T  19389951 aaaacaacttatgaacatatcataagtttttttc 19389984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 23895244 - 23895313
Alignment:
Q  241 cttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    |||| ||||||| | |||||  |||||||  |||||||||||  ||||||||||| ||||||||||||||    
T  23895244 cttaaagcataagcccttatcatataagttattatgtataagctatttctataacaaaagataaaataaa 23895313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 36641813 - 36641854
Alignment:
Q  271 cttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||    
T  36641813 cttatatataagttatttctataacaaaagataaaataaagt 36641854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 44032139 - 44032090
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||| ||||||||||| | |||||||||| |||| |||||||||||    
T  44032139 tataagtgtttatgtataagccgtttctataacaaaagctaaaataaagt 44032090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 46499994 - 46499945
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||||| ||||||  ||||||||||  ||||||||||||||||    
T  46499994 tataagtgcttatctataagctatttctataagaaaagataaaataaagt 46499945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 49517012 - 49517049
Alignment:
Q  275 tgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  49517012 tgtataagttatttctataacaaaagataaaataaagt 49517049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 50319230 - 50319271
Alignment:
Q  271 cttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||||  ||||||||||| ||||||||||||||||    
T  50319230 cttatgtataagctatttctataacaaaagataaaataaagt 50319271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 52286608 - 52286661
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||||| ||||||| |||||  ||||||| ||| ||||||||||||||||||||    
T  52286608 tataagcgcttatgaataagatatttctacaacaaaagataaaataaagttaaa 52286661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 42547 - 42592
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaata 308  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  42547 tataagtgcttatgtataagtcatttctataacaaaagataaaata 42592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 1243 - 1165
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||| |||| |||||||||   |||  ||||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  1243 ttaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagt 1165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 2732 - 2810
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||| |||| |||||||||   |||  ||||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  2732 ttaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagt 2810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 28623219 - 28623272
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||||||||||||||||| |||| |||||| ||||||||||||| ||||||    
T  28623219 tataagtgcttatgtataagttatttatataacaaaagataaaataatgttaaa 28623272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 41125814 - 41125921
Alignment:
Q  13 gcaggtcctgctaacaccaacacatctagccattgtaatggagtacgctgctggaggagaactgtttgagaggatatgtagtgctggtagatttagtgaa 112  Q
    ||||||| |||| |||||  | ||||||||||||||  ||||||| ||| |||| || ||||| || |||||||||||    |||||| |||||||||||    
T  41125814 gcaggtcttgctgacaccttctcatctagccattgtcttggagtatgcttctggtggtgaactcttcgagaggatatgctccgctggtcgatttagtgaa 41125913  T
Q  113 gatgaggt 120  Q
    ||||||||    
T  41125914 gatgaggt 41125921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 4471072 - 4471154
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||| |||||| ||||||| || ||||| |||||||||||||| ||||   |||| |||||| ||||||||||||||| ||||    
T  4471072 ttaactgcttatagcataagcaattattatataagtgcttatgcataaactatttttataacaaaagataaaataaaggtaaa 4471154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 25717434 - 25717480
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaag 311  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||    
T  25717434 taagtgcttatgtataagttatttctagaatgaaagataaaataaag 25717480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 40709549 - 40709475
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaata 308  Q
    ||||||||||| | ||||| |||||| | ||||||||||||| ||||||   |||||||||| ||||||||||||    
T  40709549 ttaagtgcttatatcataaccacttaatatataagtgcttatttataagctgtttctataacaaaagataaaata 40709475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 19422348 - 19422397
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||| ||||||||||||||| ||||||||||| ||||||| ||||||||    
T  19422348 tataaatgcttatgtataagttatttctataacaaaagatataataaagt 19422397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 236 - 309
Target Start/End: Original strand, 24936214 - 24936286
Alignment:
Q  236 aagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataa 309  Q
    ||||||||| ||||||||  |||||  |||||||| |||||||||||| ||||||||||| ||| |||||||||    
T  24936214 aagtgcttatagcataaaggcttata-tataagtggttatgtataagttatttctataacaaaatataaaataa 24936286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 30024630 - 30024679
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||| |||||| |||||| ||||||||||| ||||||||||||||||    
T  30024630 tataagtacttatgcataagttatttctataacaaaagataaaataaagt 30024679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 47970248 - 47970297
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||| ||||    
T  47970248 tataagtgcttatgtataagctatttctataacaaaagataaaatgaagt 47970297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 11389457 - 11389509
Alignment:
Q  264 ataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||||||||||||||||| | ||||||||||  ||||||||| ||||||||||    
T  11389457 ataagtgcttatgtataaattatttctataaaaaaagataaagtaaagttaaa 11389509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 24443939 - 24444015
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    ||||| ||||| ||||||| |||||||  ||||||| ||||||||||||  ||||||| ||| ||| ||||||||||    
T  24443939 ttaagcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaa 24444015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 4191669 - 4191712
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaa 306  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||    
T  4191669 tataagtgcttatgtataagctatttctataacaaaagataaaa 4191712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 4798697 - 4798650
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||||||||||  ||||||||| | ||||||||||||||||    
T  4798697 taagtgcttatgtataagctatttctatatcaaaagataaaataaagt 4798650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 15511473 - 15511422
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacga-aagataaaataaagttaa 315  Q
    ||||||||||||||||||| |||| |||||| | ||||||||||||||||||    
T  15511473 taagtgcttatgtataagttatttttataacaagaagataaaataaagttaa 15511422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 17884000 - 17884051
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||||||| |||| ||||  ||||||||||| ||||||||||||||||||||    
T  17884000 taagtgctcatgtgtaagctatttctataacaaaagataaaataaagttaaa 17884051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 21593149 - 21593102
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||||||||||||   ||||||||||| ||||||||||||||||    
T  21593149 taagtgcttatgtataaactatttctataactaaagataaaataaagt 21593102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 21683617 - 21683554
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaaagcgttttcata 328  Q
    |||||| ||||||||||   ||||||||||| |||||||| ||||||||||||  |||||||||    
T  21683617 taagtgtttatgtataaactatttctataacaaaagataagataaagttaaaacagttttcata 21683554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 51044597 - 51044550
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||| |||||||||||  ||||||||||| ||||||||||||||||    
T  51044597 taagtgtttatgtataagctatttctataacaaaagataaaataaagt 51044550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 53943525 - 53943584
Alignment:
Q  251 aaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    |||| |||||||||||||||||||| |||||| ||||| |||||| || ||| |||||||    
T  53943525 aaacgcttattgtataagtgcttatttataagccatttttataacaaaggatgaaataaa 53943584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 4663842 - 4663804
Alignment:
Q  257 ttattgtataagtgcttatgtataagtcatttctataac 295  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  4663842 ttatcgtataagtgcttatgtataagttatttctataac 4663804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 5131364 - 5131318
Alignment:
Q  271 cttatgtataagtcatttctataacgaaagataaaataaagttaaaa 317  Q
    |||||||||||||  ||| |||||| |||||||||||||||||||||    
T  5131364 cttatgtataagttgtttatataacaaaagataaaataaagttaaaa 5131318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 27671972 - 27671918
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaaa 317  Q
    ||||||||||| ||||||||| ||||| | ||| |||||||||||||||| ||||    
T  27671972 tataagtgcttgtgtataagttatttccacaacaaaagataaaataaagtcaaaa 27671918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 47946135 - 47946181
Alignment:
Q  270 gcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||||| ||||||| |||||||||||| |||||||||| ||||||||    
T  47946135 gcttatttataagttatttctataacgtaagataaaatgaagttaaa 47946181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 6364087 - 6364128
Alignment:
Q  271 cttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||||  ||||||||||| ||||||||||||||||    
T  6364087 cttatgtataagctatttctataacaaaagataaaataaagt 6364128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 353 - 382
Target Start/End: Original strand, 29263417 - 29263446
Alignment:
Q  353 tgaaaacaacttatgaacatatcataagct 382  Q
    ||||||||||||||||||||||||||||||    
T  29263417 tgaaaacaacttatgaacatatcataagct 29263446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 453
Target Start/End: Original strand, 29376016 - 29376049
Alignment:
Q  420 ttatgttaatagataagttcaaataagccaatcc 453  Q
    |||||| |||||||||||||||||||||||||||    
T  29376016 ttatgtcaatagataagttcaaataagccaatcc 29376049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 37636342 - 37636301
Alignment:
Q  266 aagtgcttatgtataagtcatttctataacgaaagataaaat 307  Q
    ||||||||||||||||  ||||| ||||||||||||||||||    
T  37636342 aagtgcttatgtataaaccatttttataacgaaagataaaat 37636301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 51556007 - 51555958
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||||||||||||  |||  |||||| ||||||||||||||||    
T  51556007 tataagtgcttatgtataagctattattataacaaaagataaaataaagt 51555958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 27483 - 27555
Alignment:
Q  240 gcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||| ||||||| | |||||  | ||||||||||||||||||| |||||||||||  |||||||||||||||    
T  27483 gcttatagcataagctcttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagt 27555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 28844387 - 28844459
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaa 306  Q
    ||||||| ||| ||||||| | |||||||||||||||||||||||||||  ||||| ||||  ||||||||||    
T  28844387 ttaagtgtttatagcataagcgcttattgtataagtgcttatgtataagatatttcgataaaaaaagataaaa 28844459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 21853262 - 21853203
Alignment:
Q  257 ttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||| ||||||||| |||| ||||||| |||||||| || ||||||||||||||||||||    
T  21853262 ttatagtataagtgattatatataagttatttctattacaaaagataaaataaagttaaa 21853203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 46081957 - 46082028
Alignment:
Q  257 ttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaaagcgttttcata 328  Q
    |||||||||||||| |||| ||||||  |||||||||||||||| ||||| ||||| ||||  |||||||||    
T  46081957 ttattgtataagtgattatatataagctatttctataacgaaagttaaaacaaagtcaaaactgttttcata 46082028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 47528096 - 47528026
Alignment:
Q  240 gcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    ||||| |||||||||||||||| || ||||| |||||||||||  ||||||||||  || |||||||||||    
T  47528096 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 47528026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 22388073 - 22388001
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaa 306  Q
    ||||| ||||| | |||||||||||||  | |||||||||||| |||||  ||||||||||| ||||||||||    
T  22388073 ttaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctataacaaaagataaaa 22388001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 33894555 - 33894599
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataa 309  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||    
T  33894555 taagtgcttatgtataagctatttctataacaaaagataaaataa 33894599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 44241790 - 44241842
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaa 315  Q
    ||||||||  ||||||||||| ||||||||||| | |||||||||||||||||    
T  44241790 tataagtgtgtatgtataagttatttctataacaacagataaaataaagttaa 44241842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 418 - 458
Target Start/End: Complemental strand, 46281101 - 46281061
Alignment:
Q  418 gtttatgttaatagataagttcaaataagccaatccgaaca 458  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  46281101 gtttatgttagtagataagttcaaataagccaatccaaaca 46281061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 1432099 - 1432060
Alignment:
Q  271 cttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  1432099 cttatgtataagttatttctataacaaaagataaaataaa 1432060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 2013106 - 2013173
Alignment:
Q  240 gcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaat 307  Q
    ||||| || |||| || |||| |||||| ||||||||||||| | ||||||||||| |||||||||||    
T  2013106 gcttatagaataagcatttatcgtataaatgcttatgtataatttatttctataacaaaagataaaat 2013173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 3610895 - 3610836
Alignment:
Q  248 cataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaat 307  Q
    ||||||||||| |  ||||||||||||||||||||  ||||||| ||| |||||||||||    
T  3610895 cataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaat 3610836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 5373157 - 5373204
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||||||||||| |  ||||||||||| ||||||||||||||||    
T  5373157 taagtgcttatgtatatgctatttctataacaaaagataaaataaagt 5373204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 24973874 - 24973921
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaa 310  Q
    |||||||||||||||| |||  ||||||||||| ||||||||||||||    
T  24973874 tataagtgcttatgtaaaagctatttctataacaaaagataaaataaa 24973921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 28165023 - 28165070
Alignment:
Q  265 taagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||||||||||||||  |||||||||| ||||||||||| ||||    
T  28165023 taagtgcttatgtataagttctttctataacaaaagataaaatgaagt 28165070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 34440997 - 34441072
Alignment:
Q  241 cttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||| ||||| ||||||| | ||||||| ||||||||||| || ||| || |||| || |||||||||||||||||    
T  34440997 cttatagcatgaacacttgtcgtataagggcttatgtatacgttattcctctaacaaacgataaaataaagttaaa 34441072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 1431477 - 1431399
Alignment:
Q  234 ttaagtgcttacagcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||| |||| |||||||   |||||  |||||||| |||||||||||| ||||| |||| |||| ||||||||||||    
T  1431477 ttaagttcttatagcataagtgcttatcatataagtgtttatgtataagttatttccataatgaaaaataaaataaagt 1431399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 420 - 458
Target Start/End: Original strand, 29363621 - 29363659
Alignment:
Q  420 ttatgttaatagataagttcaaataagccaatccgaaca 458  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  29363621 ttatgttagtagataagttcaaataagccaatccaaaca 29363659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 2223071 - 2223120
Alignment:
Q  256 cttattgtataagtgcttatgtataagtcatttctataacgaaagataaa 305  Q
    ||||| ||||||||| |||||||||||  ||||||||||| |||||||||    
T  2223071 cttatcgtataagtgtttatgtataagctatttctataacaaaagataaa 2223120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 6552410 - 6552365
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaata 308  Q
    |||||||||||||||| |||| ||||||| ||| ||||||||||||    
T  6552410 tataagtgcttatgtacaagttatttctacaacaaaagataaaata 6552365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 7244632 - 7244681
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    ||||||||||||||||||||  ||||||||| | |||||||||| |||||    
T  7244632 tataagtgcttatgtataagctatttctatatcaaaagataaaagaaagt 7244681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 15328536 - 15328589
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    |||||||||||||| ||||   ||||||||||  ||||||||||||||||||||    
T  15328536 tataagtgcttatgcataatctatttctataataaaagataaaataaagttaaa 15328589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 353 - 446
Target Start/End: Complemental strand, 36598379 - 36598287
Alignment:
Q  353 tgaaaacaacttatgaacatatcataagcttttttccgtaagctctctcaaaacgtctaacaatagtttatgttaatagataagttcaaataag 446  Q
    |||||||| ||||||||||| ||||||| | ||| || ||||||||||||||   ||| ||||| | |||||| | ||| ||||||||||||||    
T  36598379 tgaaaacagcttatgaacatgtcataagatgttt-ccataagctctctcaaacaatctcacaattgcttatgtcagtagttaagttcaaataag 36598287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 43153030 - 43152989
Alignment:
Q  275 tgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||||  ||||||||||| ||||||||||||||||||||    
T  43153030 tgtataagctatttctataacaaaagataaaataaagttaaa 43152989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 43328163 - 43328232
Alignment:
Q  247 gcataaacacttattgtataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaa 316  Q
    ||||||||||| ||  |||  |||||||||||| ||  ||||||||||| ||||||||||| ||||||||    
T  43328163 gcataaacactaatcatatcggtgcttatgtattagctatttctataaccaaagataaaattaagttaaa 43328232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 46213733 - 46213782
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagt 312  Q
    |||||||||||||||| |||  ||||||||||| ||| ||||||||||||    
T  46213733 tataagtgcttatgtaaaagctatttctataacaaaatataaaataaagt 46213782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 1864 - 1812
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaa 315  Q
    ||||||||||||| ||||||  | ||||||||| |||||||||||||||||||    
T  1864 tataagtgcttatatataagataattctataacaaaagataaaataaagttaa 1812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 3954 - 3902
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaa 315  Q
    ||||||||||||| ||||||  | ||||||||| |||||||||||||||||||    
T  3954 tataagtgcttatatataagataattctataacaaaagataaaataaagttaa 3902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 9915 - 9861
Alignment:
Q  263 tataagtgcttatgtataagtcatttctataacgaaagataaaataaagttaaaa 317  Q
    |||| |||||||||||||||| ||||||||||| ||| ||||||| |||| ||||    
T  9915 tataggtgcttatgtataagttatttctataacaaaaaataaaattaagtcaaaa 9861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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