View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5555-Insertion-5 (Length: 847)
Name: NF5555-Insertion-5
Description: NF5555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5555-Insertion-5 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 733; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 8 - 839
Target Start/End: Original strand, 47197864 - 47198696
Alignment:
| Q |
8 |
ggtctctcatagtggatgatactcccaacagtctcattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
47197864 |
ggtctctcatagtggatgatactcccaacagtctcattgaaaggggtttcgaggagaaagggaaagccgttcttacaaagattcgtggtgttgaaaatat |
47197963 |
T |
|
| Q |
108 |
tgagcccgagtttgaagacatactcagagctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47197964 |
tgagcccgagtttgaagacatactcagagctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattg |
47198063 |
T |
|
| Q |
208 |
atcattgccatctgtatgcaggtcactactcaataattataatagcattaattattaataatgaatcattt-aatgcataatgcagccgaatcaatgtta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |
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| T |
47198064 |
atcattgccatctgtatgcaggtcactactcaataactataatagcattaattattaatcatgaatcattttaatgcataatgcagtcgaatcaatgtta |
47198163 |
T |
|
| Q |
307 |
aaatattaaaccaaatacatgaatttttattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagta |
406 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47198164 |
aaatattaaaccaaatacataaatttttattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagta |
47198263 |
T |
|
| Q |
407 |
ttgttcagcactctgggatttcacaatgatgcttcactttactcatcagtgatcacaggaggtgtgaatgtcctctgcactttagtgtctgtctattttg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
47198264 |
ttgttcagcactctgggatttcacaatgatgcttcactttactcatcagtgatcacaggaggtgtgaatgtcctatgcactttagtgtctgtatattttg |
47198363 |
T |
|
| Q |
507 |
tggacaaagttgggagaaaggtacttctattggaagcatgtgtacaaatgtttgtgtcgcaagttgtaatcggcgtagtgcttgggatgaaagtcacaga |
606 |
Q |
| |
|
||||||||| |||||||| ||| || |||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||| ||| || ||| |
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|
| T |
47198364 |
tggacaaagctgggagaagggtgctcttattggaagcatgtgtgcaaatgtttgtgtcccaagttgtaattggcatagtgcttggggctaaactccaaga |
47198463 |
T |
|
| Q |
607 |
tcactcagatagcttaagcaaaggctatgcaatgttggtggtggttatggtatgcacatttgttgcatcttttgcatggtcatggggtccacttggttgg |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47198464 |
tcactcagatagcttaagcaaaggctatgcaatgttggtggtggttatggtatgcacatttgttgcatcttttgcatggtcatggggtccacttggttgg |
47198563 |
T |
|
| Q |
707 |
ttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaacatgttgttcacttttcttattgctcaagctt |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47198564 |
ttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaacatgttgttcacttttcttattgctcaagctt |
47198663 |
T |
|
| Q |
807 |
tcttgtccctgttgtgcttatttaagtttggga |
839 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
47198664 |
tcttgtccctgttgtgcttatttaagtttggga |
47198696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 354 - 823
Target Start/End: Original strand, 47185672 - 47186141
Alignment:
| Q |
354 |
aggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactcatc |
453 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
47185672 |
aggtcttccaacaattcaccggcatcaatgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttcactttactcatc |
47185771 |
T |
|
| Q |
454 |
agtgatcacaggaggtgtgaatgtcctctgcactttagtgtctgtctattttgtggacaaagttgggagaaaggtacttctattggaagcatgtgtacaa |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47185772 |
agtgatcacaggaggtgtgaatgtcctctgcaccttagtgtctgtatattttgtggacaaagttgggagaagggtacttctattggaagcatgtgtacaa |
47185871 |
T |
|
| Q |
554 |
atgtttgtgtcgcaagttgtaatcggcgtagtgcttgggatgaaagtcacagatcactcagatagcttaagcaaaggctatgcaatgttggtggtggtta |
653 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47185872 |
atgtttgtgtcgcaagttgtaatcggcgtagtgcttgggatgaaagtcacagatcactcagatagcttaagcaaaggctatgcaatgttggtggtggtta |
47185971 |
T |
|
| Q |
654 |
tggtatgcacatttgttgcatcttttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggaca |
753 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47185972 |
tggtatgcacatttgttgcatcttttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggaca |
47186071 |
T |
|
| Q |
754 |
aagtgtgactgtgtttacaaacatgttgttcacttttcttattgctcaagctttcttgtccctgttgtgc |
823 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47186072 |
aagtgtgactgtgtttacaaacatgttgttcacttttcttattgctcaagctttcttgtccatgttgtgc |
47186141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 47184982 - 47185211
Alignment:
| Q |
8 |
ggtctctcatagtggatgatactcccaacagtctcattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47184982 |
ggtctctcatagtggatgatactcccaacagtctcattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatat |
47185081 |
T |
|
| Q |
108 |
tgagcccgagtttgaagacatactcagagctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||| ||| |
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|
| T |
47185082 |
tgagcccgagtttgaagacatactcagagctagtaaagtggctaatgaggtcaagagccccttcaaggatcttgttaagtcccacaatctccctcctttg |
47185181 |
T |
|
| Q |
208 |
atcattgccatctgtatgcaggtcactact |
237 |
Q |
| |
|
|| |||||||| ||||||||||| |||||| |
|
|
| T |
47185182 |
ataattgccatatgtatgcaggtaactact |
47185211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 450
Target Start/End: Original strand, 47212308 - 47212396
Alignment:
| Q |
362 |
cagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactc |
450 |
Q |
| |
|
||||||| ||| ||||||||||| || ||||||||||||||||| |||||| ||| | |||||| | ||||||||| |||||||||| |
|
|
| T |
47212308 |
cagcaattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggatttaagaatgatgctgcactttactc |
47212396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 677 - 759
Target Start/End: Original strand, 47212623 - 47212705
Alignment:
| Q |
677 |
tttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgt |
759 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||| ||||||| |||||| | |||||| | || || ||||||||||| |
|
|
| T |
47212623 |
tttgcatggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgt |
47212705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 677 - 807
Target Start/End: Complemental strand, 748668 - 748538
Alignment:
| Q |
677 |
tttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaaca |
776 |
Q |
| |
|
||||| ||||| |||||||| || |||||| | ||||| |||||||||||||| | |||||| ||||||||||||||||||| || || | | |||| |
|
|
| T |
748668 |
tttgcttggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaaca |
748569 |
T |
|
| Q |
777 |
tgttgttcacttttcttattgctcaagcttt |
807 |
Q |
| |
|
|||||||||| ||| | |||||||| ||||| |
|
|
| T |
748568 |
tgttgttcacctttgtcattgctcaggcttt |
748538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 729
Target Start/End: Complemental strand, 41414153 - 41414049
Alignment:
| Q |
625 |
caaaggctatgcaatgttggtggtggttatggtatgcacatttgttgcatcttttgcatggtcatggggtccacttggttggttaattcctagtgagaca |
724 |
Q |
| |
|
|||||||||| |||| ||||| || ||| |||| ||| |||||||| | | || | ||||||||||||||| ||||||||| |||||| ||||||| | |
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|
| T |
41414153 |
caaaggctattcaatattggttgtagttgtggtttgcctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagata |
41414054 |
T |
|
| Q |
725 |
tttcc |
729 |
Q |
| |
|
||||| |
|
|
| T |
41414053 |
tttcc |
41414049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 677 - 756
Target Start/End: Original strand, 1356817 - 1356896
Alignment:
| Q |
677 |
tttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaag |
756 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||||| | || ||||||| ||||| ||||||| |||||||||||||||||| |
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|
| T |
1356817 |
tttggatggtcgtggggtccactaggttggttagtaccaagtgagatttttccattggagattagatcagctggacaaag |
1356896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 722
Target Start/End: Original strand, 36202702 - 36202747
Alignment:
| Q |
677 |
tttgcatggtcatggggtccacttggttggttaattcctagtgaga |
722 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
36202702 |
tttgcttggtcatggggtcctcttggttggttggttcctagtgaga |
36202747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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