View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5555_high_2 (Length: 414)
Name: NF5555_high_2
Description: NF5555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5555_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 38077065 - 38077301
Alignment:
| Q |
16 |
atgtaccttttgagttgttgacaaacatacacagataggagacacataaatggagagagatatatatcaaactacatcgatgaatgttacgtcaatatta |
115 |
Q |
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| T |
38077065 |
atgtaccttttgagttgttgacaaacatacacagacatgagacacataaatggagagagagatatatcaaactacatcaatgaatgttacgtcaatatta |
38077164 |
T |
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| Q |
116 |
caccgctcaataa-----tattacattacgcaacaaccacttatgctagactccaaacacttggttatttagaaaactcataagcctaatcacttggatt |
210 |
Q |
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| T |
38077165 |
caccgctcaataatacagtattacattacgcaacaa-cacttatgctagactccaaacacttggttatttagaaaactcataagcgtaatcacttggatt |
38077263 |
T |
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| Q |
211 |
atgtgtcnnnnnnntcagttgaattaaattttaatttgc |
249 |
Q |
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| T |
38077264 |
atgagtc-aaaaaatcagttgaattaaattttaatttgc |
38077301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 276 - 400
Target Start/End: Original strand, 38077292 - 38077416
Alignment:
| Q |
276 |
tttaatttgctgcaagcctgcaacttgaagaggttgatgagagattaataaaaacattatgnnnnnnnnaggggataaagcatatgttgtttatattta- |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| |
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| T |
38077292 |
tttaatttgctgcaagcctgcaacttgaagaggttgatgagagattaattaaaaca-tatgttttttttaggggataaagcatatgttgtttatatttat |
38077390 |
T |
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| Q |
375 |
taatattgttcgagtctttagtcctc |
400 |
Q |
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| T |
38077391 |
taatattgttcgagtctttagtcctc |
38077416 |
T |
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