View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5555_low_3 (Length: 395)

Name: NF5555_low_3
Description: NF5555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5555_low_3
NF5555_low_3
[»] chr7 (4 HSPs)
chr7 (93-383)||(45492928-45493218)
chr7 (134-222)||(30597232-30597320)
chr7 (168-226)||(6845153-6845211)
chr7 (143-220)||(32414626-32414703)
[»] chr1 (2 HSPs)
chr1 (94-383)||(14287787-14288075)
chr1 (133-216)||(28927456-28927539)
[»] chr8 (2 HSPs)
chr8 (100-226)||(27700900-27701026)
chr8 (103-214)||(35336674-35336785)
[»] chr3 (4 HSPs)
chr3 (141-225)||(7057858-7057942)
chr3 (169-225)||(8032346-8032402)
chr3 (148-226)||(13460643-13460721)
chr3 (100-226)||(13492952-13493078)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 93 - 383
Target Start/End: Complemental strand, 45493218 - 45492928
Alignment:
Q  93 gtcagaaatatgacttacattaaattgatcctaattcctgctcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttccc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45493218 gtcagaaatatgacttacattaaattgatcctaattcctgctcatccctcattgattaggttctctcctcaatacctgatttattgaagatcgagttccc 45493119  T
Q  193 ttctttgcgtaatttgaagtcactgaaagtaaaatcattcgtacctttgtgttctatacctgttttccgtatctcagccgactttttgcttcaaaactca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45493118 ttctttgcgtaatttgaagtcactgaaagtaaaatcattcgtacctttgtgttctatacctgtgttccgtatctcagccgactttttgcttcaaaactca 45493019  T
Q  293 ccgtccgcagaggttagccacataccatacgttgattaaggtaaacatgcatcgactttttaaacacaatattctggtttggtttttgcct 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45493018 ccgtccgcagaggttagccacataccatacgttgattaaggtaaacatgcatcgactttttaaacacaatattctggtttggtttttgcct 45492928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 30597320 - 30597232
Alignment:
Q  134 tcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcactgaaagt 222  Q
    |||||| ||||||||||||||||||| | | | ||||||||||||||| | ||||||| ||| ||| |||| ||||||| ||| |||||    
T  30597320 tcatccctcattgattaggttctctcgttagttcctgatttattgaaggttgagttccattccttgtgtaacttgaagttacttaaagt 30597232  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 6845153 - 6845211
Alignment:
Q  168 ctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcactgaaagtaaaa 226  Q
    |||||||||||||| | ||||||| ||| ||| |||||||||||||||| | |||||||    
T  6845153 ctgatttattgaaggttgagttccattccttgtgtaatttgaagtcacttagagtaaaa 6845211  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 32414626 - 32414703
Alignment:
Q  143 attgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcactgaaa 220  Q
    |||||||||||||| ||||   | ||||||||||||||| |  |||| ||||| ||| |||| |||||||||||||||    
T  32414626 attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaa 32414703  T

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Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 94 - 383
Target Start/End: Complemental strand, 14288075 - 14287787
Alignment:
Q  94 tcagaaatatgacttacattaaattgatcctaattcctgctcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttccct 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14288075 tcagaaatatgacttacattaaattgatcctaattcctgctcatccctcattgattaggttctctcctcaatacctgatttattgaagattgagttccct 14287976  T
Q  194 tctttgcgtaatttgaagtcactgaaagtaaaatcattcgtacctttgtgttctatacctgttttccgtatctcagccgactttttgcttcaaaactcac 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14287975 tctttgcgtaatttgaagtcactgaaagtaaaatcattcgtacctttgtgttctatacctgtgttccgtatctcagccgactttttgcttcaaaactcac 14287876  T
Q  294 cgtccgcagaggttagccacataccatacgttgattaaggtaaacatgcatcgactttttaaacacaatattctggtttggtttttgcct 383  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  14287875 cgtccgcagaggttagccacataccatatgttgattaaggtaaacatgcat-gactttttaaacacaatattctggtttggttttcgcct 14287787  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 28927539 - 28927456
Alignment:
Q  133 ctcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcact 216  Q
    |||| |||||||||||||||||||| ||| ||| ||||||||||| ||| | ||||||| ||| ||| |||| |||||||||||    
T  28927539 ctcacccttcattgattaggttctcaccttaattcctgatttattcaaggttgagttccattccttgtgtaaattgaagtcact 28927456  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 27701026 - 27700900
Alignment:
Q  100 atatgacttacattaaattgatcctaattcctgctcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttg 199  Q
    ||||||||| ||||||| ||||| | ||||    ||||||||||||| |||||||||||||  | | ||||||||||||||| | |||||  |||| ||     
T  27701026 atatgacttgcattaaactgatcatgattcaccatcatccttcattgcttaggttctctccgtagttcctgatttattgaaggttgagttttcttcctta 27700927  T
Q  200 cgtaatttgaagtcactgaaagtaaaa 226  Q
     |||| |||||||| ||||||||||||    
T  27700926 tgtaacttgaagtcgctgaaagtaaaa 27700900  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 35336674 - 35336785
Alignment:
Q  103 tgacttacattaaattgatcctaattcctgctcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgt 202  Q
    |||||| ||| ||| ||||||||||||   |||||  || |||| |||||||||||||| | | |||||||||||| || |  || ||||||||||| ||    
T  35336674 tgacttgcataaaaatgatcctaattcaccctcatttttaattgcttaggttctctccttagttcctgatttattggaggttaagctcccttctttgtgt 35336773  T
Q  203 aatttgaagtca 214  Q
    || |||||||||    
T  35336774 aacttgaagtca 35336785  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 7057942 - 7057858
Alignment:
Q  141 tcattgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcactgaaagtaaa 225  Q
    ||||||||||||||||||||| | | | |||||||| |||| | ||||||  || ||||| ||| ||||||||||| ||||||||    
T  7057942 tcattgattaggttctctccttagttcatgatttatcgaaggttgagttcaattttttgcataacttgaagtcacttaaagtaaa 7057858  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 8032402 - 8032346
Alignment:
Q  169 tgatttattgaagatcgagttcccttctttgcgtaatttgaagtcactgaaagtaaa 225  Q
    ||||||||||| | | ||||||||||| |||||||| ||||||||||||||| ||||    
T  8032402 tgatttattgacggttgagttcccttccttgcgtaacttgaagtcactgaaattaaa 8032346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 13460643 - 13460721
Alignment:
Q  148 ttaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcactgaaagtaaaa 226  Q
    |||||||||||||| | | ||| ||||||||| | |  || || ||||||||||||| ||||||||||| |||||||||    
T  13460643 ttaggttctctccttagttcctaatttattgagggttaagctctcttctttgcgtaacttgaagtcactcaaagtaaaa 13460721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 13492952 - 13493078
Alignment:
Q  100 atatgacttacattaaattgatcctaattcctgctcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttg 199  Q
    ||||||||| |||| || ||||| | |||| |  |||||||||||||  |||||||||| || | | |||||| |||| ||| | || |||||||  ||     
T  13492952 atatgacttgcattgaactgatcatgattcattatcatccttcattgcataggttctctacttagttcctgatctattaaaggttgacttcccttactta 13493051  T
Q  200 cgtaatttgaagtcactgaaagtaaaa 226  Q
    ||||| ||||||| |||||||||||||    
T  13493052 cgtaacttgaagttactgaaagtaaaa 13493078  T

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