View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5555_low_5 (Length: 300)
Name: NF5555_low_5
Description: NF5555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5555_low_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 47197537 - 47197836
Alignment:
| Q |
1 |
gctgattctaaatcaattgcaattgtgacaaaacaggctgtgccagtgtttctatctgagatagcaccaacaagaatacgtggagcacttaacattatgt |
100 |
Q |
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| T |
47197537 |
gctgattctaaatcaactgcaattttgacaaaacaggctgtgccagtttttctatctgaaatagcaccaacaagaattcgtggagcacttaacattatgt |
47197636 |
T |
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| Q |
101 |
ttcagctgaacattaccataggaattttcatagcaaacctcgtcaactggtttacatcaaagtaagttaaatttgattattaatattcgtaataacattt |
200 |
Q |
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| T |
47197637 |
ttcagctgaatattaccataggaattttcatagcaaaccttgtcaactggtttacatcaaagtaagttaaatttgattaataatattcgtaataacattt |
47197736 |
T |
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| Q |
201 |
ttaactaagtaaatattttgaactataatgtaataactgtttatattggaaaacagaatcaaaggtggatatgggtgtagattatcattggctggagcaa |
300 |
Q |
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| T |
47197737 |
ttaactaagtaaatattttgaactataatgtaataactgtttatattggaaaacagaatcaaaggtggatatgggtggagagtatcattggctggagcaa |
47197836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 47184672 - 47184954
Alignment:
| Q |
15 |
aattgcaattgtgacaaaacaggctgtgccagtgtttctatctgagatagcaccaacaagaatacgtggagcacttaacattatgtttcagctgaacatt |
114 |
Q |
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| T |
47184672 |
aattgcaattttgacaaaacaggctgtgccagtttttctatctgaaatagcaccaacaagaattcgtggagcacttaacattatgtttcagctgaacatt |
47184771 |
T |
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| Q |
115 |
accataggaattttcatagcaaacctcgtcaactggtttacatcaaagtaagttaaatttgattattaatattcgtaataacatttttaactaagtaaat |
214 |
Q |
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| T |
47184772 |
accataggaattttcatagcaaaccttgtcaactggtttacatcaaagtaagttaaatttgattaataatcttcataataaca-ttttaattaattgaaa |
47184870 |
T |
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| Q |
215 |
attttgaactataatgtaataactgtttatattggaaaacagaatcaaaggtggatatgggtgtagattatcattggctggagcaa |
300 |
Q |
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| T |
47184871 |
actttgaa-tagtctataataattgtttata-tgaaaaacagaatggaaggtggatatgggtggagaatatcattggccggagcaa |
47184954 |
T |
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