View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5555_low_7 (Length: 240)
Name: NF5555_low_7
Description: NF5555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5555_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6828361 - 6828585
Alignment:
| Q |
1 |
atttaatttatagttgagccttcaaaatggacttataagcatagagtctattaaagcaaatatattcatgaaaggtattcctggaaagtgatggacgaaa |
100 |
Q |
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| T |
6828361 |
atttaatttatagttgagccttcaaaatggacttataagcatagagtctattaaagcaaatatattcatgaaaggtattcctggaaaatgatggacgaaa |
6828460 |
T |
|
| Q |
101 |
ctgctagtgatt---gaagttccgtggacaagaagtataaaattggtcaaaagcataaagtgaatattttgaattaacaaacttgctgtccaatttaatt |
197 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6828461 |
ctgctagtgattgaagaagttccgtggacaagaagtataaaattggtcaaaagtataaagtgaatattttgaattaacaaacttgttgtccaatttaatt |
6828560 |
T |
|
| Q |
198 |
atccaacaagaaactatgtcgatat |
222 |
Q |
| |
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|||||||||||||||||||| |||| |
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|
| T |
6828561 |
atccaacaagaaactatgtctatat |
6828585 |
T |
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