View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5556-Insertion-10 (Length: 101)

Name: NF5556-Insertion-10
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5556-Insertion-10
NF5556-Insertion-10
[»] chr7 (9 HSPs)
chr7 (8-98)||(2054504-2054594)
chr7 (50-101)||(2245183-2245234)
chr7 (50-101)||(2057162-2057213)
chr7 (50-101)||(2099270-2099321)
chr7 (54-101)||(2691358-2691405)
chr7 (50-101)||(2066458-2066509)
chr7 (50-101)||(2073565-2073616)
chr7 (50-101)||(2126551-2126602)
chr7 (50-101)||(2139154-2139205)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 3e-42; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-42
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 2054504 - 2054594
Alignment:
Q  8 aaaactcttgaagcctatcaatagatggtgcttgcagagaaattagatttttgagtgtgtctcgtaaaatagatgaaattgtcacataact 98  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2054504 aaaactcttggagcctatcaatagatggtgcttgcagagaaattagatttttgagtgtgtctcgtaaaatagatgaaattgtcacataact 2054594  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 2245234 - 2245183
Alignment:
Q  50 ttagatttttgagtgtgtctcgtaaaatagatgaaattgtcacataactaag 101  Q
    |||||||| ||||||||||| ||||| |||||||||| ||||||||||||||    
T  2245234 ttagatttgtgagtgtgtctggtaaagtagatgaaatagtcacataactaag 2245183  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 2057162 - 2057213
Alignment:
Q  50 ttagatttttgagtgtgtctcgtaaaatagatgaaattgtcacataactaag 101  Q
    |||||||| ||||||||||| ||||| |||||||||| |||||| |||||||    
T  2057162 ttagatttgtgagtgtgtctggtaaagtagatgaaatagtcacaaaactaag 2057213  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 2099270 - 2099321
Alignment:
Q  50 ttagatttttgagtgtgtctcgtaaaatagatgaaattgtcacataactaag 101  Q
    |||||||| ||||||| ||| ||||| ||||||||||||||||| |||||||    
T  2099270 ttagatttgtgagtgtctctggtaaagtagatgaaattgtcacaaaactaag 2099321  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 2691405 - 2691358
Alignment:
Q  54 atttttgagtgtgtctcgtaaaatagatgaaattgtcacataactaag 101  Q
    |||| ||||||||||| ||||| |||||||||||||||||| ||||||    
T  2691405 atttgtgagtgtgtctggtaaagtagatgaaattgtcacatcactaag 2691358  T

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Target: chr7; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 2066458 - 2066509
Alignment:
Q  50 ttagatttttgagtgtgtctcgtaaaatagatgaaattgtcacataactaag 101  Q
    ||||||||  |||||| ||| ||||| ||||||||||||| |||||||||||    
T  2066458 ttagatttgcgagtgtatctggtaaagtagatgaaattgttacataactaag 2066509  T

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Target: chr7; HSP #7
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 2073565 - 2073616
Alignment:
Q  50 ttagatttttgagtgtgtctcgtaaaatagatgaaattgtcacataactaag 101  Q
    |||||||| ||||||| ||| ||||| ||||||||||||| ||| |||||||    
T  2073565 ttagatttgtgagtgtatctggtaaattagatgaaattgttacagaactaag 2073616  T

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Target: chr7; HSP #8
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 2126551 - 2126602
Alignment:
Q  50 ttagatttttgagtgtgtctcgtaaaatagatgaaattgtcacataactaag 101  Q
    |||||||| ||||||| ||| ||||| ||||||||||||| |||| ||||||    
T  2126551 ttagatttgtgagtgtatctggtaaagtagatgaaattgttacatgactaag 2126602  T

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Target: chr7; HSP #9
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 2139154 - 2139205
Alignment:
Q  50 ttagatttttgagtgtgtctcgtaaaatagatgaaattgtcacataactaag 101  Q
    ||||||||  |||||| ||| ||||| ||||||||||||| |||||||||||    
T  2139154 ttagatttgcgagtgtatctggtaaagtagatgaaattgttacataactaag 2139205  T

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