View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556-Insertion-2 (Length: 1125)
Name: NF5556-Insertion-2
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 953; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 953; E-Value: 0
Query Start/End: Original strand, 8 - 1091
Target Start/End: Complemental strand, 41178978 - 41177888
Alignment:
| Q |
8 |
agctgtaattggaggcattcacacaactactttggctaaactctccagtaagagccaagaagctctttctcaagctggcaacattgtagaacaggtgaag |
107 |
Q |
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| T |
41178978 |
agctgtaattggaggcattcacacaactactttggctaaactctccagtaagagccaagaagctctttctcaagctggcaacattgtagaacaggtaaag |
41178879 |
T |
|
| Q |
108 |
agtaacaatgacacatattgtttccttacaaagttaatagtatttgactttgtatgaattttgtcagtttttctgcatctgaggtgattttattgttgat |
207 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41178878 |
agtaacaataacacatattgtttcgttacaaagttaatagtatttgattttgtatgaattttgtcagtttttctgcatctgaggtgattttattgttgat |
41178779 |
T |
|
| Q |
208 |
attgcagacggttgtgcaaatccgagtagtgttagcattcgttggggagtcacgagcacttcaaggctactcatcagccttgaaggttgctcagaaactt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41178778 |
attgcagacggttgtgcaaatccgagtagtgttagcattcgttggggagtcacgagcacttcaaggctactcatcagccttgaaggttgctcagaaactt |
41178679 |
T |
|
| Q |
308 |
ggctacaaaactggattagcaaagggaatgggattaggtgcgacttactttgttgttttctgctgttacgcgcttcttctgtggtatggaggctatcttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41178678 |
ggctacaaaactggattagcaaagggaatgggattaggtgcgacttactttgttgttttctgctgttacgcgcttcttctgtggtatggaggctatcttg |
41178579 |
T |
|
| Q |
408 |
taaggcatcacgaaaccaatggagggcttgccattgcaactatgtttgccgtcatgattggtggaatgtgagtaccagggcattttgtgttttagcaaac |
507 |
Q |
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| T |
41178578 |
taaggcatcacgaaaccaatggagggcttgccattgcaactatgtttgccgtcatgattggtggaatgtgagtaccagagcattttgtgttttagcaaac |
41178479 |
T |
|
| Q |
508 |
aaaatcatagtggttgaatttcgagtttcttaatgtttaataagttttaacgatttgatttgatttacgtagaggtttggggcaatctgcaccgagcatg |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41178478 |
aaaatcatagtggttgaatttcgagtttcttaatgtttaatacgttttaacgatttgatttgatttacgtagaggtttggggcaatctgcaccgagcatg |
41178379 |
T |
|
| Q |
608 |
gctgcatttacaaaggctagagttgcggctgctaagattttccggataattgatcaccagcctggtatagatagaaacagtgaatctggattggaattag |
707 |
Q |
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| T |
41178378 |
gctgcatttacaaaggctagagttgcggctgctaagattttccggataattgatcaccagcctggtatagatagaaacagtgaatctggattggaattag |
41178279 |
T |
|
| Q |
708 |
agacggtcactggacttgttgaactgaaaaatgtggacttctcttatccatcaagacctgaagttctgatcctcagtgatttctccttgagtgttcctgc |
807 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41178278 |
agacagttactggacttgttgaactgaaaaatgtggacttctcttatccatcaagacctgaagttctgatcctcaatgatttctccttgagtgttcctgc |
41178179 |
T |
|
| Q |
808 |
cggaaagaccatagctttagttggtagcagcggctctggcaagagcactgctgtttctcttattgagagattctatgatccaacttcaggtaaattttaa |
907 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41178178 |
cggaaagaccatagctttagttggtagcagcggctctggcaagagcactgttgtttctcttattgagagattctatgatccaacttcaggtaaattttaa |
41178079 |
T |
|
| Q |
908 |
aattactgtttagtttggacgattgaattttgagatttgaagttttatg-tagtagtagtgcctg-tacattacattgttccggaaatttggtgca-gac |
1004 |
Q |
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| T |
41178078 |
aattactgtttagtttggacgattgaattttgagatttgaagttttatgttagtagtagtggctgttacattacattgttccgaaaatttggtgcaggac |
41177979 |
T |
|
| Q |
1005 |
cagt-atgttgaatgggcatggacattaaa--cttgaggcttaaatggttga-gcaccaaataggactagtgag-ctagaacctgctttgtt |
1091 |
Q |
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||| |||||| |||||||| ||||||||| |||| |||||||||||||| ||| ||||||||||||||||| | ||||||||||||||| |
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| T |
41177978 |
aagtaatgttggatgggcat-gacattaaaactttgaagcttaaatggttgaggcaacaaataggactagtgagccaagaacctgctttgtt |
41177888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 3e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 209 - 482
Target Start/End: Original strand, 27807355 - 27807628
Alignment:
| Q |
209 |
ttgcagacggttgtgcaaatccgagtagtgttagcattcgttggggagtcacgagcacttcaaggctactcatcagccttgaaggttgctcagaaacttg |
308 |
Q |
| |
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|||||||| |||||||||| |||| ||||||||||| ||||||||| || |||||| |||||||| ||||| || |||| ||||||||| || ||| |
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| T |
27807355 |
ttgcagactattgtgcaaattagagtggtgttagcatttgttggggagacaaaagcactacaaggctattcatctgctttgagggttgctcaaaagattg |
27807454 |
T |
|
| Q |
309 |
gctacaaaactggattagcaaagggaatgggattaggtgcgacttactttgttgttttctgctgttacgcgcttcttctgtggtatggaggctatcttgt |
408 |
Q |
| |
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| |||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| || || | | ||||||||||||||| | || |
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| T |
27807455 |
gttacagaactggatttgcaaagggaattggattaggtgctacttactttgttgttttctgctgttatgcactcttgttatggtatggaggctatttggt |
27807554 |
T |
|
| Q |
409 |
aaggcatcacgaaaccaatggagggcttgccattgcaactatgtttgccgtcatgattggtggaatgtgagtac |
482 |
Q |
| |
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| T |
27807555 |
tcggcatgactacactaatggaggacttgcaatttccacaatgtttgctgtcatgattggtggattgtaagtac |
27807628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 593 - 855
Target Start/End: Original strand, 27807788 - 27808050
Alignment:
| Q |
593 |
tctgcaccgagcatggctgcatttacaaaggctagagttgcggctgctaagattttccggataattgatcaccagcctggtatagatagaaacagtgaat |
692 |
Q |
| |
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|||||||| |||||| ||||||||||||||| |||||||| ||||| || || ||| | | || |||||| ||||| ||||||| | || ||||||| |
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| T |
27807788 |
tctgcaccaagcatgattgcatttacaaaggcaagagttgctgctgcgaaaatcttcggtgtgatcgatcacaagccttgtatagacaagaaaagtgaat |
27807887 |
T |
|
| Q |
693 |
ctggattggaattagagacggtcactggacttgttgaactgaaaaatgtggacttctcttatccatcaagacctgaagttctgatcctcagtgatttctc |
792 |
Q |
| |
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| || ||||| ||||| || || || ||||| || || || |||||||| ||||| || |||||||||||||||||||||| |||||| |||||||| |
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| T |
27807888 |
caggtttggagttagaaactgtgacaggactagtggagcttaaaaatgtagacttttcatatccatcaagacctgaagttcagatccttcacgatttctc |
27807987 |
T |
|
| Q |
793 |
cttgagtgttcctgccggaaagaccatagctttagttggtagcagcggctctggcaagagcac |
855 |
Q |
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| T |
27807988 |
cttgagcgttccttctgggaagaccatagctttggttggaagcagtggctctggcaagagcac |
27808050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 27806730 - 27806825
Alignment:
| Q |
8 |
agctgtaattggaggcattcacacaactactttggctaaactctccagtaagagccaagaagctctttctcaagctggcaacattgtagaacaggt |
103 |
Q |
| |
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||||||||||||||||||||| || | ||||||| || | || |||| || |||||||||||||||||||||||||||||||| |||||||| |
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| T |
27806730 |
agctgtaattggaggcattcatactatcactttgggcaagttatctggtaaaagtcaagaagctctttctcaagctggcaacattgtggaacaggt |
27806825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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