View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556-Insertion-3 (Length: 830)
Name: NF5556-Insertion-3
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556-Insertion-3 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 497; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 157 - 830
Target Start/End: Complemental strand, 43110665 - 43109996
Alignment:
| Q |
157 |
aggataggatgatgatggagcttaattctaatggaaaaaccattgaagacattgtgcaagttttgaagaggattcctatacaccctagaatagtcccttc |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43110665 |
aggataggatgatgatggagcttaattctaatggaaaaaccattgaagacattgtgcaagttttgaagaggattcctatacaccctagaataatcccttc |
43110566 |
T |
|
| Q |
257 |
cattaaagcagcctatactttagggtatattgtatacaccattttgtccctctaccnnnnnnnnnnnnnnnnnnnnnnatagtatttagaagaaaaacta |
356 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
43110565 |
cattaaagcagcctatactttagggtat---gtatacaccattttgtccctctaccttttttcatttatttttgttttatagtatttacaagaaaaacta |
43110469 |
T |
|
| Q |
357 |
gaggagagataatttatattgttgcattttataatctttttattttcaggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaat |
456 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43110468 |
gaggagagataaattatattgttgcattttataatctttttattttcaggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaat |
43110369 |
T |
|
| Q |
457 |
tctgaagcattttggtattaggggatgtttctcagagattaacactaatccaggttatgttgatgaaggaaggttgagaattttgccttaccatgatctc |
556 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43110368 |
tctgaagcattttggtattagggaatgtttctcagagattaacactaatccaggttatgttgatgaaggaaggttgagaattttgccttaccatgatctc |
43110269 |
T |
|
| Q |
557 |
aataagcctcctcacaaatgtaatctgtgtcctccaaacatgtgcaaggtgtgtatatctatctaatctaatgtgaggagagaaattaattgaatacata |
656 |
Q |
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| T |
43110268 |
aataagcctcctcacaaatgtaatctgtgtcctccaaacatgtgcaaggtgtgtatatctatctaatctaatgtgaggagagaaattaattgaatacata |
43110169 |
T |
|
| Q |
657 |
atttcccaataaagataattttgaaattaattgtatttttcccatttgatgaatgaaacgatataactttattgtgnnnnnnntgttcaaatacttttca |
756 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43110168 |
atttccctataaagataattttgaaattaattgtatttttcccatttgatgaatgaaacgatataactttattgtgaaaaaaatgttcaaatacttttca |
43110069 |
T |
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| Q |
757 |
attctattttgaattcaattttaacnnnnnnnngggaaagttgtctagtgcatcacgttttattatgtgttgtc |
830 |
Q |
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||| |||||||| |||||||||||| ||| |||||||||||||||| | ||||||| ||||||||| |
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| T |
43110068 |
attttattttgatttcaattttaacaaaaaaagggg-aagttgtctagtgcatagctttttattctgtgttgtc |
43109996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 401 - 608
Target Start/End: Complemental strand, 26314888 - 26314678
Alignment:
| Q |
401 |
ttcaggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaaca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||| ||||||||| |||||||||| |
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| T |
26314888 |
ttcaggtgtgatttgaggattgtaagtgatgcaaacacatttttcattgagacaattctaaagcactttggaattagggaatgtttctcggagattaaca |
26314789 |
T |
|
| Q |
501 |
ctaatccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataagcctcctcacaaatgtaatctgtgtcctccaaacat |
597 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||| ||||||||||||| ||||||| |||| ||||||||||| |
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| T |
26314788 |
ctaatccaggttatgttgatgaagaaggaagattgagaattttgcctttctatgatctcaacaagcctcctcacacatgtaatttgtgccctccaaacat |
26314689 |
T |
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| Q |
598 |
gtgcaaggtgt |
608 |
Q |
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||||||||||| |
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| T |
26314688 |
gtgcaaggtgt |
26314678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 26315549 - 26315422
Alignment:
| Q |
157 |
aggataggatgatgatggagcttaattctaatggaaaaaccattgaagacattgtgcaagttttgaagaggattcctatacaccctagaatagtcccttc |
256 |
Q |
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||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||| | | |
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| T |
26315549 |
aggataggatgatgatggagcttcattctaatggaaaaacaatagaagacattgtgcaagttttgaagatgattcctatacaccctagaactatccatgc |
26315450 |
T |
|
| Q |
257 |
cattaaagcagcctatactttagggtat |
284 |
Q |
| |
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|| ||||||||| || ||||||||||| |
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| T |
26315449 |
tatcaaagcagccaatgctttagggtat |
26315422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 43110768 - 43110698
Alignment:
| Q |
54 |
tgttttttcaatgatatatcattttgtccctctaacgtgcattgtgtttatgtgacataattaaatgactc |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43110768 |
tgttttttcaatgatatatcattttgtccctctaacgtgcattgtgtttatgtgacataaataaatgactc |
43110698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 43110850 - 43110797
Alignment:
| Q |
8 |
ccatggaacaatctcatggtaagatttttatatgttcgaagatttgtgtttttt |
61 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43110850 |
ccatggaacaatctcatggtaagatttttatatgttcgaagatttgtgtttttt |
43110797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 405 - 562
Target Start/End: Complemental strand, 5272513 - 5272353
Alignment:
| Q |
405 |
ggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaa |
504 |
Q |
| |
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||||||||||||||||||| |||||||| || | ||||| |||||| || ||| |||||||||| || ||||| | ||| ||||||||||||||| |||| |
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| T |
5272513 |
ggtgtgatttgaggattgttagtgatgctaatatgttttacattgaaactattttgaagcatttgggaattagtgaatgcttctcagagattaactctaa |
5272414 |
T |
|
| Q |
505 |
tccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataag |
562 |
Q |
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||| ||||||||| || |||||||| | ||||||| |||||||||||| |||||||| |
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| T |
5272413 |
tcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataag |
5272353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 405 - 562
Target Start/End: Original strand, 5250048 - 5250208
Alignment:
| Q |
405 |
ggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaa |
504 |
Q |
| |
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||||||||||||||||||| |||||||| || || ||||||||||| |||||| ||||| |||| || || || | || ||| | |||||||||||||| |
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| T |
5250048 |
ggtgtgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtgaatacttcactgagattaacactaa |
5250147 |
T |
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| Q |
505 |
tccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataag |
562 |
Q |
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||| ||||||||| || ||||||| || |||||||| |||||||||||| |||||||| |
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| T |
5250148 |
tcctggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataag |
5250208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 405 - 517
Target Start/End: Original strand, 5269268 - 5269380
Alignment:
| Q |
405 |
ggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaa |
504 |
Q |
| |
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||||||||||||||||||| || ||||| || ||| |||||||||| |||||| |||||||||| || ||||| | ||| ||||| ||||||||||| || |
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| T |
5269268 |
ggtgtgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaagcatttgggaattagtgaatgcttctctgagattaacaccaa |
5269367 |
T |
|
| Q |
505 |
tccaggttatgtt |
517 |
Q |
| |
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||| ||||||||| |
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| T |
5269368 |
tcctggttatgtt |
5269380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 405 - 562
Target Start/End: Complemental strand, 5276492 - 5276332
Alignment:
| Q |
405 |
ggtgtgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattaggggatgtttctcagagattaacactaa |
504 |
Q |
| |
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||||||||||||||||||| |||||||| || | ||||| |||||| || ||| |||||||||| || || || | || ||| | |||||||||||||| |
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| T |
5276492 |
ggtgtgatttgaggattgttagtgatgctaatatgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagattaacactaa |
5276393 |
T |
|
| Q |
505 |
tccaggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataag |
562 |
Q |
| |
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||| ||||||||| || |||||||| | ||||||| |||||||||||| |||||||| |
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| T |
5276392 |
tcctggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataag |
5276332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 5249925 - 5249978
Alignment:
| Q |
157 |
aggataggatgatgatggagcttaattctaatggaaaaaccattgaagacattg |
210 |
Q |
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|||||||||||||||||||| || |||| ||||| |||||||||||||| |||| |
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| T |
5249925 |
aggataggatgatgatggagattcattcaaatggtaaaaccattgaagagattg |
5249978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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