View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556-Insertion-5 (Length: 685)
Name: NF5556-Insertion-5
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556-Insertion-5 |
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| [»] scaffold0354 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 578; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 8 - 662
Target Start/End: Complemental strand, 25014778 - 25014121
Alignment:
| Q |
8 |
tccctttccttttctgatcagatttgcgagatccctgctttccttttgcgagttcattttgtttggatctgattttgaaggggttatagtttcctgtgcg |
107 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25014778 |
tccctttccttttctgatcggatttgcgagatccctgctttccttttgcgagttcattttgtttggatctgattttgaaggggttttagtttcctgtgcg |
25014679 |
T |
|
| Q |
108 |
ttgaatttgtttaatgattctatccatcaattcctcaggttgattagacttattgaggtgtgatggtagacttgttgttgtacaacaattgtgttgcaaa |
207 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25014678 |
ttgaatttgtttgatgattctatccatcaattcctcaggttgattagacttattgaggtgtgatggtagacttgttgttgtacagcaattgtgttgcaat |
25014579 |
T |
|
| Q |
208 |
gatgatggtgaaattttaaagctaattaatatgacagagaattggactagaaagattgattagatagagagaaaaatgtgcattaaatgactcttaagct |
307 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25014578 |
gatgatggtgaaattttaaagctaattaatatgacagagaattggactagaaaggttgattagatagagagaaaaatgtgcattaaatgactcttaagct |
25014479 |
T |
|
| Q |
308 |
gtgcaacattgcacaggttagaaaacccctaaatgtaatacagatgacagaactctaggaaatccaggacagtttgcttgtgctggaatattcagaaagg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25014478 |
gtgcaacattgcacaggttagaaaacccctaaatgtaatacagatgacacaactctaagaaatccagggcagtttgcttgtgctggaatattcagaaagg |
25014379 |
T |
|
| Q |
408 |
gttgttttgcaatcaatcttggtatttcaaatgctctctttgctgagc----taatgggagtgagtattgttgtggaaactgcctatatgaagaattgga |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
25014378 |
gttgttttgcaatcaatcttggtatttcaaatgctctctttgctgagctaattaatgggagtgagtattgctgtggaaactgactatatgaagaattgga |
25014279 |
T |
|
| Q |
504 |
attacttatggattgaaagtgattctaaattagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacatatggaaaaattgtct |
603 |
Q |
| |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25014278 |
atcacttatggattgaaagtgattctaaaatagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacataaggaaaaattgtct |
25014179 |
T |
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| Q |
604 |
actcaaactatcctctattgaatttcataatcacacacatctaatcaaattgttgtttg |
662 |
Q |
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| T |
25014178 |
actcaaactatcctcta-tgaatttcataatcacacacatctaatcaaattgttgtttg |
25014121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 25015126 - 25015183
Alignment:
| Q |
280 |
aaaatgtgcattaaatgactcttaagctgtgcaacattgcacaggttagaaaacccct |
337 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
25015126 |
aaaatgtgcattaaatgactcttaagctatgcaacattgcacaggttagaaaaaccct |
25015183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 404 - 646
Target Start/End: Complemental strand, 33068308 - 33068068
Alignment:
| Q |
404 |
aagggttgttttgcaatcaatcttggtatttcaaatgctctctttgctgagctaatgggagtgagtattgttgtggaaactgcctatatgaagaattgga |
503 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| | || |
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| T |
33068308 |
aagggttgttttgcaatcaatcttggaatttcaaatgctctctttgctaagctaatgggagtgattactgttgtggaaactgcctatatgaagaa-tcga |
33068210 |
T |
|
| Q |
504 |
attacttatggattgaaagtgattctaaattagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacatatggaaaaattgtct |
603 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| || |
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| T |
33068209 |
atcacttatggattgaaagtgattctaaattagcttgcttggcgttcaagtctcctcatatagtgccttggaaacttaagaacagatggaaaaatcccct |
33068110 |
T |
|
| Q |
604 |
actcaaactatcctctattgaatttcataatcacacacatcta |
646 |
Q |
| |
|
| ||||||| |||| || |||||||||| |||||||||||||| |
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| T |
33068109 |
agtcaaactgtcctata-tgaatttcatgatcacacacatcta |
33068068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 9915281 - 9915318
Alignment:
| Q |
300 |
cttaagctgtgcaacattgcacaggttagaaaacccct |
337 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |||| |
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| T |
9915281 |
cttaagctgtgcaacattgcaaaggttagaaaaaccct |
9915318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 19116058 - 19115949
Alignment:
| Q |
35 |
gagatccctgctttccttttgcgagttcattttgtttggatctgattttgaaggggttatagtttcctgtgcgttgaatttgtttaatgattctatccat |
134 |
Q |
| |
|
|||||| ||| |||||| || ||| ||||||||| |||||||| ||| |||||||||| |||| || |||||||||||||| ||| |||||||||||| | |
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| T |
19116058 |
gagatcactgatttcctcttacgatttcattttggttggatctaattatgaaggggttttagtctcttgtgcgttgaattt-tttgatgattctatcctt |
19115960 |
T |
|
| Q |
135 |
caattcctcag |
145 |
Q |
| |
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|||||| |||| |
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| T |
19115959 |
caattcatcag |
19115949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 410 - 594
Target Start/End: Original strand, 19955154 - 19955338
Alignment:
| Q |
410 |
tgttttgcaatcaatcttggtatttcaaatgctctctttgctgagctaatgggagtgagtattgttgtggaaactgcctatatgaagaattggaattact |
509 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || ||| |||||| || |||||||| | | ||| |||||| ||| ||| || || | |||| ||| |
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|
| T |
19955154 |
tgttttgcaatcaatctaggaatttcaaatgccctttttcctgagccaaagggagtgattttagttttggaaattgcttatgacaaaaactagaatcact |
19955253 |
T |
|
| Q |
510 |
tatggattgaaagtgattctaaattagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacatatggaa |
594 |
Q |
| |
|
|||||||||||||||||| || || ||| ||||| |||||||||| | | ||||| |||||||| || ||||| |||||||| |
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|
| T |
19955254 |
tatggattgaaagtgatttaaagttggctaccttggccttcaagtctcatcacatagttccttggaagctcaagaatatatggaa |
19955338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 27542535 - 27542498
Alignment:
| Q |
300 |
cttaagctgtgcaacattgcacaggttagaaaacccct |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
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|
| T |
27542535 |
cttaagctgtgcaacattgcacaggttagaaaaaccct |
27542498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 27543363 - 27543395
Alignment:
| Q |
300 |
cttaagctgtgcaacattgcacaggttagaaaa |
332 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
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|
| T |
27543363 |
cttaagctgtgcaacattgcacatgttagaaaa |
27543395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0354 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 6760 - 6651
Alignment:
| Q |
35 |
gagatccctgctttccttttgcgagttcattttgtttggatctgattttgaaggggttatagtttcctgtgcgttgaatttgtttaatgattctatccat |
134 |
Q |
| |
|
|||||||| | |||||| || ||| ||| ||||| |||||||| ||| |||||||||| |||| | ||||||||||||||| ||| |||||||||| | | |
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|
| T |
6760 |
gagatcccagatttcctcttacgatttccttttggttggatctaattatgaaggggttttagtctactgtgcgttgaattt-tttgatgattctattctt |
6662 |
T |
|
| Q |
135 |
caattcctcag |
145 |
Q |
| |
|
|||||| |||| |
|
|
| T |
6661 |
caattcatcag |
6651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 22707248 - 22707195
Alignment:
| Q |
279 |
aaaaatgtgcattaaatgactcttaagctgtgcaacattgcacaggttagaaaa |
332 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||||||||||||||||||| |
|
|
| T |
22707248 |
aaaaatgtgcattaattaaggcttaagctgtgcaacattgcacaggttagaaaa |
22707195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 22689744 - 22689806
Alignment:
| Q |
279 |
aaaaatgtgcattaaatgactcttaagctgtgcaacattgcacaggttagaaaacccctaaat |
341 |
Q |
| |
|
||||| ||||||||| ||| ||||| ||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
22689744 |
aaaaaagtgcattaattgattcttatcctgtgcaacattgcacatgttagaaaaaccctaaat |
22689806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 17833846 - 17833884
Alignment:
| Q |
299 |
tcttaagctgtgcaacattgcacaggttagaaaacccct |
337 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
17833846 |
tcttaagctgtgcaacattgcacatgttagaaaatccct |
17833884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 43230512 - 43230470
Alignment:
| Q |
290 |
ttaaatgactcttaagctgtgcaacattgcacaggttagaaaa |
332 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
43230512 |
ttaaatgactcttaaactgtgcaacattgtacatgttagaaaa |
43230470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 15025756 - 15025719
Alignment:
| Q |
300 |
cttaagctgtgcaacattgcacaggttagaaaacccct |
337 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
15025756 |
cttaagctgtgcaagattgcacaggttagaaaaaccct |
15025719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 44902209 - 44902156
Alignment:
| Q |
279 |
aaaaatgtgcattaaatgactcttaagctgtgcaacattgcacaggttagaaaa |
332 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||| ||||||||||||||||| |
|
|
| T |
44902209 |
aaaaaagtgcattaactgcttcttaagctgtgcaatgttgcacaggttagaaaa |
44902156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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