View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556-Insertion-6 (Length: 601)
Name: NF5556-Insertion-6
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556-Insertion-6 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 8 - 601
Target Start/End: Original strand, 26378596 - 26379184
Alignment:
| Q |
8 |
atatcatctgcaatcatttgcaataccaagcatcgcaacgtggtcgtgacttaaaacgttgttagtatttacaagtattaggattgcataacaacttaat |
107 |
Q |
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| T |
26378596 |
atatcatctgcaatcatttgcaataccaagcattgcaacgtggtcgtgacttaaaacgttgttagtatttacaagtattaggattgcataacaacttaat |
26378695 |
T |
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| Q |
108 |
gtttgttttgtgcacaccaatacttcagatctaagacacgtcttagtatctgaaacattactaacattcgtaattaattacatacaataacttatattta |
207 |
Q |
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| T |
26378696 |
gtttgttttgtgcacaccaatacttcagatctaagacacgtcttagtatctgaaacattactaacattcgtaattaattacatacaataacttatattta |
26378795 |
T |
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| Q |
208 |
ctaaagttattatcattttctacttgtcattgtcgtgtcatatctagtgttcgtgtcggttcttcctaggttttatttactttggtaaacatgacnnnnn |
307 |
Q |
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| T |
26378796 |
ctaaagttattatcattttctacttgtcattgtcgtgtcatatctagtgttcatgtcggttcttcctaggttttatttactttggtaaacatgacttttt |
26378895 |
T |
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| Q |
308 |
nnaaaaaggttcacgactgcaatctaggcaatatcatcaaagtttttatgcttccacaatcgcaacacaactgcaatcgaggccatatcagctgcaattc |
407 |
Q |
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| T |
26378896 |
taaaaaaggttcacgactgcaatctaggcaatatcatcaaagtttttatgcttccacaatcgcaacacaactgcaattgaggccatatcagctgcaattc |
26378995 |
T |
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| Q |
408 |
ttcgcaataccgagcatcgcaacatggtcgtgacttaaaacattgttatcatataaaactatcaagatcatgtcttagtgtctgacatgttactaaaacc |
507 |
Q |
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| T |
26378996 |
ttcgcaataccgagcatcgcaacatggtcgtgacttaaaacgttgttagcatataaaactatcaagatcatgtcttagtgtccgacatgttactaacact |
26379095 |
T |
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| Q |
508 |
catagtaaattataaacaaaacaatcaacttctatcttccaaatttattatcactttctacgtgtcagtgttatgtctggtgttcaaatgtgtg |
601 |
Q |
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| T |
26379096 |
cgtagtaaattat-----aaacaatcaacttctatcttccaaatttaccatcactttctacgtgtcagtgttatgtctggtgttcatatgtgtg |
26379184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 360 - 455
Target Start/End: Original strand, 26378564 - 26378659
Alignment:
| Q |
360 |
tccacaatcgcaacacaactgcaatcgaggccatatcagctgcaattcttcgcaataccgagcatcgcaacatggtcgtgacttaaaacattgtta |
455 |
Q |
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| T |
26378564 |
tccacgatcgcaacacaaccacaatcacggccatatcatctgcaatcatttgcaataccaagcattgcaacgtggtcgtgacttaaaacgttgtta |
26378659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 26377886 - 26377941
Alignment:
| Q |
310 |
aaaaaggttcacgactgcaatctaggcaatatcatcaaagt-ttttatgcttccac |
364 |
Q |
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| T |
26377886 |
aaaaaggtccacgactgcaatctaggcaatatcatcaaagtattttatgcctccac |
26377941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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