View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5556-Insertion-7 (Length: 453)

Name: NF5556-Insertion-7
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5556-Insertion-7
NF5556-Insertion-7
[»] chr7 (16 HSPs)
chr7 (142-221)||(27756267-27756344)
chr7 (142-223)||(35793375-35793454)
chr7 (142-220)||(24432630-24432705)
chr7 (143-192)||(43657831-43657880)
chr7 (148-222)||(28960649-28960719)
chr7 (142-227)||(967652-967735)
chr7 (145-226)||(21939312-21939391)
chr7 (149-186)||(9477432-9477469)
chr7 (142-226)||(35793703-35793785)
chr7 (148-197)||(47030299-47030348)
chr7 (142-197)||(15327726-15327780)
chr7 (142-224)||(15327979-15328058)
chr7 (142-197)||(24432360-24432415)
chr7 (149-223)||(24679086-24679158)
chr7 (149-187)||(30283440-30283478)
chr7 (149-220)||(9477136-9477205)
[»] chr3 (20 HSPs)
chr3 (142-226)||(3354920-3355002)
chr3 (142-222)||(49579147-49579225)
chr3 (148-224)||(15311838-15311911)
chr3 (142-197)||(33687628-33687683)
chr3 (142-224)||(50420856-50420936)
chr3 (143-225)||(33381507-33381588)
chr3 (147-197)||(43902555-43902605)
chr3 (142-217)||(3354755-3354828)
chr3 (142-225)||(16883769-16883850)
chr3 (142-197)||(26465991-26466047)
chr3 (152-187)||(1807645-1807680)
chr3 (142-223)||(33687949-33688028)
chr3 (142-226)||(43902801-43902883)
chr3 (149-225)||(53255266-53255340)
chr3 (149-187)||(17258172-17258210)
chr3 (149-187)||(40988632-40988670)
chr3 (149-186)||(47284533-47284570)
chr3 (149-186)||(54716748-54716785)
chr3 (149-224)||(1807415-1807487)
chr3 (149-220)||(51226492-51226561)
[»] chr2 (20 HSPs)
chr2 (142-226)||(23993894-23993976)
chr2 (148-224)||(14289265-14289338)
chr2 (142-221)||(35125158-35125234)
chr2 (142-224)||(23993722-23993801)
chr2 (142-220)||(31227123-31227199)
chr2 (142-223)||(10522643-10522722)
chr2 (149-187)||(35500333-35500371)
chr2 (149-225)||(14816039-14816113)
chr2 (149-224)||(14983942-14984015)
chr2 (149-220)||(29370719-29370788)
chr2 (149-226)||(23048287-23048362)
chr2 (148-224)||(13491478-13491550)
chr2 (149-186)||(35180527-35180564)
chr2 (149-186)||(37343687-37343724)
chr2 (149-224)||(4423421-4423493)
chr2 (295-350)||(6191124-6191180)
chr2 (149-224)||(9780927-9781000)
chr2 (295-355)||(10077634-10077694)
chr2 (145-181)||(13491793-13491829)
chr2 (131-187)||(43741725-43741781)
[»] chr5 (16 HSPs)
chr5 (147-197)||(36501424-36501474)
chr5 (142-197)||(36628661-36628716)
chr5 (144-189)||(22408783-22408828)
chr5 (155-226)||(20364679-20364748)
chr5 (123-222)||(38944149-38944246)
chr5 (149-227)||(36361029-36361105)
chr5 (149-226)||(6464317-6464392)
chr5 (143-227)||(12167100-12167182)
chr5 (142-226)||(38498116-38498198)
chr5 (147-221)||(37426694-37426765)
chr5 (149-186)||(10169050-10169087)
chr5 (149-186)||(16039742-16039779)
chr5 (149-226)||(20126660-20126737)
chr5 (154-199)||(36400487-36400532)
chr5 (143-183)||(12166843-12166883)
chr5 (142-225)||(20986944-20987025)
[»] scaffold0006 (2 HSPs)
scaffold0006 (142-221)||(162278-162355)
scaffold0006 (144-197)||(161746-161799)
[»] chr1 (29 HSPs)
chr1 (142-221)||(10532492-10532569)
chr1 (143-197)||(22347541-22347595)
chr1 (142-226)||(39384562-39384644)
chr1 (142-220)||(1484658-1484734)
chr1 (145-226)||(10532212-10532290)
chr1 (149-222)||(37008218-37008289)
chr1 (149-225)||(367161-367235)
chr1 (142-221)||(13575137-13575213)
chr1 (142-197)||(84255-84310)
chr1 (149-226)||(41915764-41915839)
chr1 (142-226)||(1406599-1406681)
chr1 (295-356)||(1444992-1445053)
chr1 (148-197)||(10231117-10231166)
chr1 (148-220)||(31651337-31651406)
chr1 (152-212)||(31651650-31651708)
chr1 (145-197)||(39411891-39411942)
chr1 (149-224)||(46573069-46573142)
chr1 (142-197)||(1484394-1484449)
chr1 (148-187)||(29816413-29816451)
chr1 (149-227)||(31907934-31908010)
chr1 (142-226)||(39384235-39384316)
chr1 (142-197)||(39411608-39411662)
chr1 (149-227)||(50503697-50503773)
chr1 (142-225)||(29816117-29816195)
chr1 (145-202)||(83909-83966)
chr1 (149-186)||(13344417-13344454)
chr1 (145-224)||(10230786-10230862)
chr1 (142-178)||(13574860-13574896)
chr1 (142-186)||(51690435-51690479)
[»] chr6 (18 HSPs)
chr6 (142-197)||(1614838-1614893)
chr6 (123-197)||(1615014-1615089)
chr6 (142-226)||(12101692-12101772)
chr6 (142-222)||(2164692-2164770)
chr6 (142-222)||(2176325-2176403)
chr6 (151-223)||(30369784-30369853)
chr6 (123-181)||(499320-499378)
chr6 (149-187)||(12799034-12799072)
chr6 (142-197)||(1894717-1894771)
chr6 (149-223)||(2538983-2539054)
chr6 (295-352)||(24672302-24672360)
chr6 (150-226)||(2164417-2164490)
chr6 (150-226)||(2176050-2176123)
chr6 (149-186)||(2840824-2840861)
chr6 (149-186)||(12730577-12730614)
chr6 (151-223)||(15139572-15139642)
chr6 (146-186)||(1894483-1894523)
chr6 (149-224)||(12798726-12798798)
[»] chr8 (15 HSPs)
chr8 (143-197)||(29219359-29219413)
chr8 (145-213)||(29219086-29219152)
chr8 (148-226)||(9498906-9498982)
chr8 (149-224)||(8409807-8409879)
chr8 (148-224)||(9234721-9234795)
chr8 (145-197)||(5899234-5899286)
chr8 (142-220)||(34232761-34232835)
chr8 (149-226)||(29196604-29196679)
chr8 (149-226)||(45522433-45522508)
chr8 (148-226)||(2044672-2044747)
chr8 (142-224)||(5899514-5899594)
chr8 (149-187)||(5645767-5645805)
chr8 (123-184)||(2044938-2044999)
chr8 (149-186)||(7477372-7477409)
chr8 (142-186)||(18929337-18929381)
[»] scaffold0286 (2 HSPs)
scaffold0286 (142-222)||(17639-17717)
scaffold0286 (150-226)||(17919-17992)
[»] chr4 (17 HSPs)
chr4 (146-221)||(16322979-16323052)
chr4 (142-197)||(3369871-3369926)
chr4 (149-223)||(53831152-53831224)
chr4 (148-191)||(33122859-33122902)
chr4 (148-220)||(30626587-30626656)
chr4 (142-186)||(15845162-15845206)
chr4 (142-224)||(11787062-11787141)
chr4 (142-223)||(11787319-11787396)
chr4 (142-224)||(11799229-11799308)
chr4 (142-223)||(11799486-11799563)
chr4 (149-223)||(30064002-30064074)
chr4 (142-197)||(54953747-54953801)
chr4 (163-224)||(41148556-41148615)
chr4 (149-187)||(49804338-49804376)
chr4 (149-186)||(26858379-26858416)
chr4 (130-186)||(40489246-40489302)
chr4 (149-189)||(47742263-47742303)
[»] scaffold1088 (1 HSPs)
scaffold1088 (142-197)||(2105-2160)
[»] scaffold0010 (1 HSPs)
scaffold0010 (142-226)||(128150-128232)
[»] scaffold0172 (1 HSPs)
scaffold0172 (142-223)||(9872-9950)
[»] scaffold0092 (1 HSPs)
scaffold0092 (148-197)||(37808-37856)
[»] scaffold0020 (1 HSPs)
scaffold0020 (295-352)||(152248-152306)
[»] scaffold0047 (2 HSPs)
scaffold0047 (149-186)||(63070-63107)
scaffold0047 (149-186)||(63305-63342)


Alignment Details
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 27756344 - 27756267
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaag 221  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||  |||||| |||||||||||||||||    
T  27756344 ggctggattgtattttattttgttagggggccaaaatcgcaactacctaatact--taaggggccaaaactgctattaag 27756267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 35793454 - 35793375
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcc 223  Q
    ||||| ||||||||||||||||||||||| | |||||||||||||||||| |  | || ||| |||||||||||||||||||    
T  35793454 ggctgaattgtattttattttgttaggggcctaaaatcgcaacttcctaaaa--tttagggggccaaaactgctattaagcc 35793375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 24432630 - 24432705
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaa 220  Q
    |||| ||||||||||||||||||||| |  ||||||||||||| ||||||||||  |||||| ||||||||||||||||    
T  24432630 ggctagattgtattttattttgttagtgagccaaaatcgcaac-tcctaatact--taaggggccaaaactgctattaa 24432705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 43657831 - 43657880
Alignment:
Q  143 gctggattgtattttattttgttaggggaccaaaatcgcaacttcctaat 192  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  43657831 gctgaattgtattttattttgttagggtgccaaaatcgcaacttcctaat 43657880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 28960719 - 28960649
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagc 222  Q
    ||||||||||||||||||| |||||||||||| ||||||| | ||||||   |||| ||||||||||||||||||    
T  28960719 attgtattttattttgtta-gggaccaaaatcacaacttcttgatactt---aggggccaaaactgctattaagc 28960649  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 967652 - 967735
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaat 227  Q
    ||||| |||||||||||||||||||| |||| |||||| |||||| || |||| || ||  ||||||||||| |||||| ||||||    
T  967652 ggctgaattgtattttattttgttagaggactaaaatcacaactttctgatacctaaaa--gaccaaaactgttattaaacctaat 967735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 21939312 - 21939391
Alignment:
Q  145 tggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||||||| ||  |||| ||||||| |||||||||||||||| | |||||  || ||| ||||||||||||||||||||||    
T  21939312 tggattgtaattgttttttttagggggccaaaatcgcaacttcgtgatact--tagggggccaaaactgctattaagcctaa 21939391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 9477432 - 9477469
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||||||||||||||| |||||||||||||||    
T  9477432 ttgtattttattttgttagggggccaaaatcgcaactt 9477469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 35793703 - 35793785
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    |||| |||||||||||||||||||| |||  |||||||| ||||||||| || ||||  ||| ||||||||| | ||||||||||    
T  35793703 ggctagattgtattttattttgttaaggggtcaaaatcgtaacttcctagtatttat--ggggccaaaactgttgttaagcctaa 35793785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 47030348 - 47030299
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||||||||||||||||| |||| |||||||||||||| || |||||||    
T  47030348 attgtattttattttgttatgggatcaaaatcgcaactttcttatactta 47030299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 15327780 - 15327726
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||| ||||||||||||||||||||||| ||||||| |||| ||||| |||||||    
T  15327780 ggctgaattgtattttattttgttagggg-ccaaaattgcaaattccttatactta 15327726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 15327979 - 15328058
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    ||||| |||||||||||||||||||||||   |||||| ||||| |||||||||  || ||||| ||||||||| ||||||||    
T  15327979 ggctgtattgtattttattttgttagggg-ttaaaatcacaactccctaatact--taggggactaaaactgctgttaagcct 15328058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 24432415 - 24432360
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||||| ||||||||||||| ||||||  |||||||||||||||| | |||||||    
T  24432415 ggctggactgtattttatttttttagggagccaaaatcgcaacttcttgatactta 24432360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 24679086 - 24679158
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcc 223  Q
    |||||||||||||||||||||| |||||||||||| ||| | | ||  ||| ||| ||||||||| |||||||||    
T  24679086 ttgtattttattttgttagggggccaaaatcgcaatttcttgaaac--atagggggccaaaactgttattaagcc 24679158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 30283478 - 30283440
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttc 187  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  30283478 ttgtattttattttgttatggggccaaaatcgcaacttc 30283440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 9477205 - 9477136
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaa 220  Q
    |||||||||||||||||| ||| | |||||||||||||  ||| ||  ||| ||| ||||||||||||||||    
T  9477205 ttgtattttattttgttaaggggctaaaatcgcaactttttaaaac--atagggggccaaaactgctattaa 9477136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 3354920 - 3355002
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||  || ||| ||||| ||||||||||||||||    
T  3354920 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcttgatact--tagggggccaaatctgctattaagcctaa 3355002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 49579147 - 49579225
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagc 222  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||| || |||||  ||||||  |||||||||||||||||    
T  49579147 ggctgaattgtattttattttgttaggggactaaaatcgcaactttctgatact--taaggggtcaaaactgctattaagc 49579225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 15311911 - 15311838
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||||||||| |  ||| |||||||||||||||||||    
T  15311911 attgtattttattttgttagggg-ccaaaattgcaacttcataatacttaga--ggatcaaaactgctattaagcct 15311838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 33687683 - 33687628
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| || |||||||    
T  33687683 ggctggattgtattttattttgttagggggctaaaatcgcaactttctgatactta 33687628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 50420856 - 50420936
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    |||| |||||| ||||||||||||| |||  ||||||||||||||| |||||||||  |||  ||||||||||||||||||||    
T  50420856 ggctagattgtgttttattttgttaaggggtcaaaatcgcaacttcataatacttaggagg--ccaaaactgctattaagcct 50420936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 33381588 - 33381507
Alignment:
Q  143 gctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagccta 225  Q
    |||| ||||||||||||||||||| |||  |||||| ||||||||||||||||||   ||| ||| |||||||||||||||||    
T  33381588 gctgaattgtattttattttgttaaggggtcaaaattgcaacttcctaatactta-ggggggccataactgctattaagccta 33381507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 43902605 - 43902555
Alignment:
Q  147 gattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||||||    
T  43902605 gattgtattttattttgttaaggggccaaaatcacaacttcctaatactta 43902555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 3354828 - 3354755
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctat 217  Q
    ||||||||||||||||||||| ||||| | |||||||||||| ||||| |||||  || ||| |||||||||||||    
T  3354828 ggctggattgtattttattttcttaggaggccaaaatcgcaatttcctgatact--tagggggccaaaactgctat 3354755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 16883769 - 16883850
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagccta 225  Q
    ||||||||||||||||| |||||||||||  |||||||||||||| || |||||  || ||| |||||| | ||||||||||||    
T  16883769 ggctggattgtattttaatttgttagggggtcaaaatcgcaactttctgatact--tagggggccaaaaatactattaagccta 16883850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 26466047 - 26465991
Alignment:
Q  142 ggctggattgtattttattttgtta-ggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||| ||||||||||||||||||| |||| |||||||||||||||| |||||||||    
T  26466047 ggctgaattgtattttattttgttaggggggccaaaatcgcaacttcataatactta 26465991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 1807645 - 1807680
Alignment:
Q  152 tattttattttgttaggggaccaaaatcgcaacttc 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  1807645 tattttattttgttaggggaccaaaatcgcaacttc 1807680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 33687949 - 33688028
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcc 223  Q
    ||||| |||||||||||||||||||||||  || ||||||||||| || ||||||| |  |  |||||||||||||||||||    
T  33687949 ggctgaattgtattttattttgttagggggtcagaatcgcaactttctgatacttaga--gagccaaaactgctattaagcc 33688028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 43902801 - 43902883
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    |||| ||||||||||||||||||||||||    |||| ||||||| ||||||||  ||| |||| |||||||||||||| |||||    
T  43902801 ggctagattgtattttattttgttagggggttgaaattgcaactttctaatact--taaaggactaaaactgctattaaacctaa 43902883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 53255266 - 53255340
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagccta 225  Q
    ||||| ||||||| |||||||| |||||||||||||||| ||| ||  ||| | | |||||||||||||||||||||    
T  53255266 ttgtagtttatttagttagggggccaaaatcgcaacttcttaaaac--ataggaggccaaaactgctattaagccta 53255340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 17258172 - 17258210
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttc 187  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  17258172 ttgtattttaatttgttaggggtccaaaatcgcaacttc 17258210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 40988670 - 40988632
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttc 187  Q
    |||||||||| || |||||||||||||||||||||||||    
T  40988670 ttgtattttaattagttaggggaccaaaatcgcaacttc 40988632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 47284533 - 47284570
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||| || ||||||||||||||||||||||||    
T  47284533 ttgtattttaattagttaggggaccaaaatcgcaactt 47284570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 54716748 - 54716785
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||| || ||||||||||||||||||||||||    
T  54716748 ttgtattttaattagttaggggaccaaaatcgcaactt 54716785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 1807415 - 1807487
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    |||||||||||||| || ||| ||||||||||||| ||| ||| |  |||| ||| ||||||||||||||||||||    
T  1807415 ttgtattttattttttt-gggaaccaaaatcgcaaattcttaaaa--tatagggggccaaaactgctattaagcct 1807487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 51226492 - 51226561
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaa 220  Q
    |||||||||| || |||||||| |||||||||||||||| ||| ||  ||| |||||||||| ||| |||||    
T  51226492 ttgtattttaattagttaggggtccaaaatcgcaacttcttaaaac--ataggggaccaaaagtgcaattaa 51226561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 23993894 - 23993976
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataaggga-ccaaaactgctattaagcctaa 226  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||   ||||| |||||||||||||||| |||||    
T  23993894 ggctggattgtattttattttgttagggggccaaaattgcaacttcttaatactt---agggagccaaaactgctattaaacctaa 23993976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 14289338 - 14289265
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    ||||||||||||||||||||||| |||||||||||||||| | |||||||  |||    ||||||||||||||||||    
T  14289338 attgtattttattttgttagggggccaaaatcgcaacttcatgatacttaggagg---aaaaactgctattaagcct 14289265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 35125158 - 35125234
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaag 221  Q
    ||||| |||||||||| ||||||||||||  ||||||||| ||||||||||||||   |||| ||||||||| |||||||    
T  35125158 ggctgaattgtattttcttttgttagggggtcaaaatcgctacttcctaatactt---aggggccaaaactgttattaag 35125234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 23993801 - 23993722
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    ||||||||| |||||||||||||| || ||||||||||||||||| || |||||  || ||||  ||||||||||||||||||    
T  23993801 ggctggattatattttattttgtt-ggagaccaaaatcgcaactttctgatact--taggggataaaaactgctattaagcct 23993722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 31227123 - 31227199
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaa 220  Q
    ||||| |||||||||||||||||||| ||  ||||||||||||||||| ||| |||  |||  ||||||||||||||||    
T  31227123 ggctgtattgtattttattttgttagagggtcaaaatcgcaacttcctgatatttaggagg--ccaaaactgctattaa 31227199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 10522722 - 10522643
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcc 223  Q
    ||||| ||||||||||||||| |||| ||||||||||| ||||||| | |||||  |||||  | |||||||||||||||||    
T  10522722 ggctgcattgtattttattttattagtggaccaaaatcacaacttcttgatact--taaggaccaaaaactgctattaagcc 10522643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 35500333 - 35500371
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttc 187  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  35500333 ttgtattttattttgttagggggccaaaatcgcaacttc 35500371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 14816039 - 14816113
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagccta 225  Q
    ||||| ||||||| |||||||| |||||||||||||||| | | ||  ||| ||| |||||||||||||||||||||    
T  14816039 ttgtagtttatttagttagggggccaaaatcgcaacttcttgaaac--atagggggccaaaactgctattaagccta 14816113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 14983942 - 14984015
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    |||||||||| || ||||||||||||||||||||||||| ||| ||  ||| ||| |||||| ||| |||||||||    
T  14983942 ttgtattttaattagttaggggaccaaaatcgcaacttcttaaaac--atacggggccaaaagtgcaattaagcct 14984015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 29370788 - 29370719
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaa 220  Q
    |||||||||||||||| |||||| ||||||||||||||| ||| ||  ||| ||| |||||||| |||||||    
T  29370788 ttgtattttattttgtcaggggatcaaaatcgcaacttcttaaaac--atagggggccaaaacttctattaa 29370719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 23048362 - 23048287
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    |||||||||| || |||||||| |||||||||||||||| ||| |  |||||||| |||||| ||| ||| |||||||    
T  23048362 ttgtattttaattagttagggggccaaaatcgcaacttcttaaaa--tataaggggccaaaaatgcaatttagcctaa 23048287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 13491550 - 13491478
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    |||||||||||||||||||||||| |||||||  |||||| |||||  | |||||| | ||||||||||||||||||    
T  13491550 attgtattttattttgttagggga-caaaatcttaacttcgtaata--tttaaggg-ctaaaactgctattaagcct 13491478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 35180527 - 35180564
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  35180527 ttgtattttaatttgttagggggccaaaatcgcaactt 35180564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 37343724 - 37343687
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||| || ||||||||||||||||||||||||    
T  37343724 ttgtattttaattagttaggggaccaaaatcgcaactt 37343687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 4423493 - 4423421
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    ||||| ||||||||||||  || |||||||||||||||| ||| ||  ||||||| |||||||||| |||||||||    
T  4423493 ttgtagtttattttgttaaagggccaaaatcgcaacttcttaaaac--ataaggg-ccaaaactgcaattaagcct 4423421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 6191180 - 6191124
Alignment:
Q  295 tacaatatcatggaggacttaaattactattaaa-ttttatatagactaaacttgaa 350  Q
    |||||||| |||||||||| ||||||| |||||| |||||||  |||||||||||||    
T  6191180 tacaatattatggaggactaaaattaccattaaaattttatagggactaaacttgaa 6191124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 9780927 - 9781000
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    ||||| ||||||| ||||| ||| ||||||||||||||  ||| ||  ||||||| |||||||||| |||||||||    
T  9780927 ttgtagtttatttagttagaggatcaaaatcgcaactttttaaaac--ataaggggccaaaactgcaattaagcct 9781000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 10077694 - 10077634
Alignment:
Q  295 tacaatatcatggaggacttaaattactattaaattttatatagactaaacttgaaaactc 355  Q
    |||||||| ||| |||| | ||||||| |||||| ||||||  ||||||||||||||||||    
T  10077694 tacaatattatgaaggattaaaattaccattaaaatttatagggactaaacttgaaaactc 10077634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 13491793 - 13491829
Alignment:
Q  145 tggattgtattttattttgttaggggaccaaaatcgc 181  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  13491793 tggattgtattttattttgttaaggggccaaaatcgc 13491829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 43741725 - 43741781
Alignment:
Q  131 caatacctagcggctggattgtattttattttgttaggggaccaaaatcgcaacttc 187  Q
    |||||| ||| |||||  |||||||||| || ||||||||| |||||||||||||||    
T  43741725 caatacataggggctgttttgtattttaattagttaggggatcaaaatcgcaacttc 43741781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 36501474 - 36501424
Alignment:
Q  147 gattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36501474 gattgtattttattttgttaggggaccaaaatcgcaacttcctgatactta 36501424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 36628661 - 36628716
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    |||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  36628661 ggctagattatattttattttattaggggaccaaaattgcaacttcctaatactta 36628716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 22408783 - 22408828
Alignment:
Q  144 ctggattgtattttattttgttaggggaccaaaatcgcaacttcct 189  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  22408783 ctggattgtattttattttgttagggggtcaaaatcgcaacttcct 22408828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 20364748 - 20364679
Alignment:
Q  155 tttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||||||||||||||  ||||||||||||||||| |||||  || |||  |||||||||||||||||||||    
T  20364748 tttattttgttagggggtcaaaatcgcaacttcctgatact--tagggggacaaaactgctattaagcctaa 20364679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 38944149 - 38944246
Alignment:
Q  123 aaaagggccaatacctagcggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagc 222  Q
    ||||||| |||||| |||  | || ||| ||||||||||||||| | | ||| ||| ||||||||||||||||  |||||| ||||||||||||||||||    
T  38944149 aaaagggacaatacttagaagttgtattatattttattttgttaagaggccataattgcaacttcctaatact--taaggggccaaaactgctattaagc 38944246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 36361105 - 36361029
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaat 227  Q
    ||||| ||||||| ||||||||| ||||||||||||||| | | ||  ||| |||||||||||||| ||||||||||||    
T  36361105 ttgtactttatttagttaggggatcaaaatcgcaacttcttgaaac--ataggggaccaaaactgcaattaagcctaat 36361029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 6464317 - 6464392
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||| ||||||| |||||||| |||||||||||||||| | | ||  ||| ||| ||||||||||||||||||||||    
T  6464317 ttgtagtttatttagttagggggccaaaatcgcaacttcttgaaac--atagggggccaaaactgctattaagcctaa 6464392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 12167100 - 12167182
Alignment:
Q  143 gctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaat 227  Q
    |||||||||||||||||||||||| |||||||||||   |||||  ||||||||||  |||  || |||||||||||| ||||||    
T  12167100 gctggattgtattttattttgttaagggaccaaaattataactttttaatacttat--gggggcagaactgctattaaacctaat 12167182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 38498198 - 38498116
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||| ||||||||||||||| ||||||| | ||||| |||||||||| |||||  || | |  |||||||||||||||||||||    
T  38498198 ggctgaattgtattttatttttttagggggcgaaaattgcaacttcctgatact--taggtggtcaaaactgctattaagcctaa 38498116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 37426694 - 37426765
Alignment:
Q  147 gattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaag 221  Q
    |||||||||||||||||||||||| | ||||| ||||||| || |||||  || ||| |||||||||||||||||    
T  37426694 gattgtattttattttgttagggg-ctaaaattgcaactttctgatact--tagggggccaaaactgctattaag 37426765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 10169087 - 10169050
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||| || ||||||||||||||||||||||||    
T  10169087 ttgtattttaattagttaggggaccaaaatcgcaactt 10169050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 16039742 - 16039779
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||| || ||||||||||||||||||||||||    
T  16039742 ttgtattttaattagttaggggaccaaaatcgcaactt 16039779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 20126660 - 20126737
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||| ||||||| ||||||||  ||||||||||||||| ||| || ||   ||| |||||||| |||||||||||||    
T  20126660 ttgtagtttatttagttagggggtcaaaatcgcaacttcttaaaacatagggggggccaaaactcctattaagcctaa 20126737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 36400532 - 36400487
Alignment:
Q  154 ttttattttgttaggggaccaaaatcgcaacttcctaatacttata 199  Q
    |||| |||| |||||||||||||||||||||||| ||| |||||||    
T  36400532 ttttttttttttaggggaccaaaatcgcaacttcttaaaacttata 36400487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 12166883 - 12166843
Alignment:
Q  143 gctggattgtattttattttgttaggggaccaaaatcgcaa 183  Q
    |||||||||||||||||||||||||||| | ||||| ||||    
T  12166883 gctggattgtattttattttgttagggggctaaaattgcaa 12166843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 20987025 - 20986944
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagccta 225  Q
    ||||| ||||||||| ||||||||||| || ||||||| |||||| || ||||||| |  ||  ||||||||||||||| ||||    
T  20987025 ggctgaattgtatttaattttgttaggagatcaaaatcacaactttctgatacttaga--gggtcaaaactgctattaaaccta 20986944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 162278 - 162355
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaag 221  Q
    ||||| ||||||||||||||||||||||| |||||||| || ||||| ||||||  |||||| |||||||||||||||||    
T  162278 ggctgtattgtattttattttgttagggggccaaaatcacatcttcccaatact--taaggggccaaaactgctattaag 162355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 161746 - 161799
Alignment:
Q  144 ctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    |||||||||||||||||||||||| || |||||||| || ||| || |||||||    
T  161746 ctggattgtattttattttgttagagggccaaaatctcatcttactgatactta 161799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 10532492 - 10532569
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaag 221  Q
    |||||||||||||||||||||||| | || ||||||||| |||||||||||||  ||| ||| |||||||||||||||||    
T  10532492 ggctggattgtattttattttgttggagggccaaaatcgtaacttcctaatac--atagggggccaaaactgctattaag 10532569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 22347595 - 22347541
Alignment:
Q  143 gctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    |||||||||||||||||||||||||||||  |||| |||||||||||||||||||    
T  22347595 gctggattgtattttattttgttaggggagtaaaagcgcaacttcctaatactta 22347541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 39384562 - 39384644
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||||||||||||||||||| ||||| | ||||| |||||||||||| |||||  || |||||||||||| || ||||||||||    
T  39384562 ggctggattgtattttattttattaggaggccaaattcgcaacttcctgatact--taggggaccaaaactactgttaagcctaa 39384644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 1484658 - 1484734
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaa 220  Q
    ||||| ||||||||||| |||||||||||  ||||||| ||||||||||||||||| |  || ||||||||||||||||    
T  1484658 ggctgaattgtattttactttgttagggggtcaaaatcacaacttcctaatacttaga--gggccaaaactgctattaa 1484734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 10532290 - 10532212
Alignment:
Q  145 tggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    |||||| |||||||||||||| |||| | ||||||||||||||||||||||  || |||  |||||||||||||||||||||    
T  10532290 tggattatattttattttgttgggggtc-aaaatcgcaacttcctaatact--tagggggtcaaaactgctattaagcctaa 10532212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 37008289 - 37008218
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagc 222  Q
    |||||||||||||||||||||| |||||||||||||||| | | ||  ||| ||| ||||||||||||||||||    
T  37008289 ttgtattttattttgttagggggccaaaatcgcaacttcttgaaac--atagggggccaaaactgctattaagc 37008218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 367161 - 367235
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagccta 225  Q
    |||||||||||||||||||||| ||||||||||||| || | | |  |||| |||| ||||||||||||||||||||    
T  367161 ttgtattttattttgttagggggccaaaatcgcaacctcttgaaa--tataggggatcaaaactgctattaagccta 367235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 13575137 - 13575213
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaag 221  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||||| |||||  || ||| | |||||||||||||||    
T  13575137 ggctggattgtattttattttgttatggg-ccaaaatcgcatcttcctgatact--tagggggctaaaactgctattaag 13575213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 84255 - 84310
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    |||||||||||||||||||||||||| |  ||||||| |||||||||| |||||||    
T  84255 ggctggattgtattttattttgttagagagccaaaattgcaacttcctgatactta 84310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 41915764 - 41915839
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||| |||||||  |||||||| ||||||||||||||| | | |  |||| ||||||||||||||||||||||||||    
T  41915764 ttgtagtttatttatttaggggatcaaaatcgcaacttcttgaaa--tataggggaccaaaactgctattaagcctaa 41915839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 1406599 - 1406681
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||||||||||||||||||| ||||| |  ||||||||||| ||||| ||||||| |  || |||||| | |||||||||||||    
T  1406599 ggctggattgtattttattttattaggaggtcaaaatcgcaatttcctgatacttaga--gggccaaaaatactattaagcctaa 1406681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 1445053 - 1444992
Alignment:
Q  295 tacaatatcatggaggacttaaattactattaaattttatatagactaaacttgaaaactcg 356  Q
    |||||||| |||||||| | ||||||||   |||||||||| ||||||||||||||||||||    
T  1445053 tacaatattatggaggattaaaattacttaaaaattttatagagactaaacttgaaaactcg 1444992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 10231117 - 10231166
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    |||||||||||||||||||| || ||||||||| |||||| |||||||||    
T  10231117 attgtattttattttgttagagggccaaaatcgaaacttcttaatactta 10231166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 31651406 - 31651337
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaa 220  Q
    |||| |||||||||||||| || |||||||||||||||| |||||||||||  ||| ||||| ||||||||||    
T  31651406 attgaattttattttgttaagg-accaaaatcgcaactttctaatacttat--ggggccaaagctgctattaa 31651337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 31651650 - 31651708
Alignment:
Q  152 tattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaact 212  Q
    ||||||||||||||| |||| ||||||| |||||| |||||||||||  ||||||||||||    
T  31651650 tattttattttgttaagggatcaaaatcacaactttctaatacttat--gggaccaaaact 31651708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 39411891 - 39411942
Alignment:
Q  145 tggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||||||||||||||||||||||||  |||||||||||||| || |||||||    
T  39411891 tggattgtattttattttgttagggg-tcaaaatcgcaactttcttatactta 39411942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 46573069 - 46573142
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    ||||| ||| |||| |||||||||||||||||||||||| ||| | ||| |  |||| ||||||||||||||||||    
T  46573069 ttgtagttttttttcttaggggaccaaaatcgcaacttcgtaaaagttaga--ggacaaaaactgctattaagcct 46573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 1484449 - 1484394
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||| ||| |||||||||||||||| || |||||||||||||||||  |||||||    
T  1484449 ggctgaattatattttattttgttagagggccaaaatcgcaacttccagatactta 1484394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 29816413 - 29816451
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttc 187  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  29816413 attgtattttattttgtt-ggggaccaaaatcgcaacttc 29816451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 31907934 - 31908010
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaat 227  Q
    ||||||||||||||||||   |||||||||| ||||||||| |||  | |||| | |||||||||||||||| ||||||    
T  31907934 ttgtattttattttgttaaatgaccaaaatcacaacttcctgata--tttaagtggccaaaactgctattaaccctaat 31908010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 39384316 - 39384235
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataaggga-ccaaaactgctattaagcctaa 226  Q
    |||| |||||||||||||||||||| |||  |||| |||||||||||| ||||||   ||||| |||||| |||||||||||||||    
T  39384316 ggcttgattgtattttattttgttatggg-tcaaactcgcaacttcctgatactt---agggagccaaaattgctattaagcctaa 39384235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 39411662 - 39411608
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||| ||||||||||||||||||||||| ||||||||  || |||||||||||||    
T  39411662 ggctgaattgtattttattttgttagggg-ccaaaatcctaatttcctaatactta 39411608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 50503773 - 50503697
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaat 227  Q
    |||||||||| || |||||||| |||||||||||||||| ||| ||  ||| |||||||||| ||  ||||||||||||    
T  50503773 ttgtattttaattagttagggggccaaaatcgcaacttcttaaaac--ataggggaccaaaagtgaaattaagcctaat 50503697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 29816195 - 29816117
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagccta 225  Q
    ||||| ||||||||||||||||||||||| ||||||   ||||||||| |||||  || |||  ||||| ||||||||||||||    
T  29816195 ggctgaattgtattttattttgttagggggccaaaa---caacttcctgatact--tagggggtcaaaattgctattaagccta 29816117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 83966 - 83909
Alignment:
Q  145 tggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagg 202  Q
    |||||||||||||||||||| |||||  |||||| |||| || |||||||||| ||||    
T  83966 tggattgtattttattttgtaagggggtcaaaattgcaattttctaatacttagaagg 83909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 13344417 - 13344454
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||| || ||||||||||||||||||||||||    
T  13344417 ttgtattttaattagttaggggaccaaaatcgcaactt 13344454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 10230862 - 10230786
Alignment:
Q  145 tggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    ||||||| ||||||||||||||||||  | |||| |||||||||| |||||  || ||| ||||||||| ||||||||||    
T  10230862 tggattgaattttattttgttagggg-tcgaaattgcaacttccttatact--tagggggccaaaactgttattaagcct 10230786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 13574896 - 13574860
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaat 178  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  13574896 ggctgaattgtattttattttgttagggggccaaaat 13574860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 51690435 - 51690479
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    ||||| ||||||||||||||||||| | | |||||||||||||||    
T  51690435 ggctgaattgtattttattttgttacgaggccaaaatcgcaactt 51690479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 1614893 - 1614838
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  1614893 ggctggattgtattttattttgttaggaggccacaatcgcaacttcctaatactta 1614838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 1615014 - 1615089
Alignment:
Q  123 aaaagggccaatacctagcggctggattgtattttattttgtta-ggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||||| |||||| |||  |||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  1615014 aaaaggggcaatacttaggtgctggattgtattttattttgttaggggggccaaaatcgcaactttctaatactta 1615089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 12101692 - 12101772
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||||||||||||||||||||||||| | |||||||| |||||| || |||||  ||||||||  |||||||||||||||||||    
T  12101692 ggctggattgtattttattttgttaggaggccaaaatcacaactttctgatact--taagggac--aaactgctattaagcctaa 12101772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 2164692 - 2164770
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagc 222  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||| |||||   | ||| ||||||||||||||||||    
T  2164692 ggctggattgtattttattttgttagggtgtcaaaatcgcaacttcctgatact--cagggggccaaaactgctattaagc 2164770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 2176325 - 2176403
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagc 222  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||| |||||   | ||| ||||||||||||||||||    
T  2176325 ggctggattgtattttattttgttagggtgtcaaaatcgcaacttcctgatact--cagggggccaaaactgctattaagc 2176403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 30369853 - 30369784
Alignment:
Q  151 gtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcc 223  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||  ||||||| |||||||||||||||||||    
T  30369853 gtattttattttgttaggggac-aaaatcgcaacttcttaaaac--ataaggggccaaaactgctattaagcc 30369784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 499320 - 499378
Alignment:
Q  123 aaaagggccaatacctagcggctggattgtattttattttgttaggggaccaaaatcgc 181  Q
    ||||||| || ||| |||||||||| ||||| |||||||||||||||||||||||||||    
T  499320 aaaaggggcagtacttagcggctgggttgtaatttattttgttaggggaccaaaatcgc 499378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 12799034 - 12799072
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttc 187  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  12799034 ttgtattttattttgttaggtgaccaaaatcgcaacttc 12799072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 1894717 - 1894771
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||| |||||||||||||||||||||||   ||||||||||||| ||||||||||    
T  1894717 ggctgaattgtattttattttgttagggg-ttaaaatcgcaactttctaatactta 1894771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 2539054 - 2538983
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcc 223  Q
    ||||||||||||||||||||||  ||||||||||||||  ||| ||  ||| |||||||||||| ||||||||||    
T  2539054 ttgtattttattttgttagggg-tcaaaatcgcaactttttaaaac--ataggggaccaaaactactattaagcc 2538983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 24672360 - 24672302
Alignment:
Q  295 tacaatatcatggaggacttaaattactattaaa-ttttatatagactaaacttgaaaa 352  Q
    |||||||| |||||||||| ||||||| |||||| |||||||  |||||||||||||||    
T  24672360 tacaatattatggaggactaaaattaccattaaaattttatagggactaaacttgaaaa 24672302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 2164490 - 2164417
Alignment:
Q  150 tgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||||||| ||| ||||||| |||||||||||||||  | ||||||| |  ||| |||||||||||||||||||||    
T  2164490 tgtattttactttattagggg-ccaaaatcgcaactttatgatacttaga--ggatcaaaactgctattaagcctaa 2164417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 2176123 - 2176050
Alignment:
Q  150 tgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||||||| ||| ||||||| |||||||||||||||  | ||||||| |  ||| |||||||||||||||||||||    
T  2176123 tgtattttactttattagggg-ccaaaatcgcaactttatgatacttaga--ggatcaaaactgctattaagcctaa 2176050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 2840861 - 2840824
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  2840861 ttgtattttttttttttaggggaccaaaatcgcaactt 2840824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 12730577 - 12730614
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||| || ||||||||||||||||||||||||    
T  12730577 ttgtattttaattagttaggggaccaaaatcgcaactt 12730614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 15139642 - 15139572
Alignment:
Q  151 gtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcc 223  Q
    ||||||||||||||||  || | ||||||||||||||||| ||||||  |||   ||||||||||||||||||    
T  15139642 gtattttattttgttaaagggcaaaaatcgcaacttcctagtacttaggagg--tcaaaactgctattaagcc 15139572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 1894523 - 1894483
Alignment:
Q  146 ggattgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  1894523 ggattgtattttattttattaggtgaccaaaatcacaactt 1894483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 12798798 - 12798726
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    |||||||||||||||||||| | | |||||||||||||| | | |  |||| ||| ||||||||||||||||||||    
T  12798798 ttgtattttattttgttaggag-caaaaatcgcaacttcttgaaa--tatagggggccaaaactgctattaagcct 12798726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 29219359 - 29219413
Alignment:
Q  143 gctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  29219359 gctggattgtatattattttgttagggggctaaaatcgcaacttcctaatactta 29219413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 29219152 - 29219086
Alignment:
Q  145 tggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactg 213  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||||||||  || |||||||||||||    
T  29219152 tggattgtattttattttattaggggactaaaatcacaacttcctaatact--taggggaccaaaactg 29219086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 9498982 - 9498906
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||||||||||||||||| |||  ||||||||||||||||| |||||  || ||| ||||||||| ||||||||||||    
T  9498982 attgtattttattttgttatggggtcaaaatcgcaacttcctgatact--tagggggccaaaactgttattaagcctaa 9498906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 8409807 - 8409879
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    |||||||||||||||||||||| |||||||||||||||| ||| || |||   ||  |||||||||||||||||||    
T  8409807 ttgtattttattttgttaggggcccaaaatcgcaacttcttaaaacatat---gggtcaaaactgctattaagcct 8409879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 9234721 - 9234795
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    ||||||||||| |||||||| || |||||||||||||||||| |||  | ||||||| ||||||| |||||||||||    
T  9234721 attgtattttaatttgttagagggccaaaatcgcaacttcctgata--tttaagggatcaaaactactattaagcct 9234795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 5899286 - 5899234
Alignment:
Q  145 tggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    |||||||||||||||||||||||||  || ||||||||||||||| |||||||    
T  5899286 tggattgtattttattttgttagggagccgaaatcgcaacttcctgatactta 5899234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 34232835 - 34232761
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaa 220  Q
    ||||| ||||||||||||||| ||||||| ||||||| ||||| |||||||||||   |||| ||||||||||||||||    
T  34232835 ggctgaattgtattttattttattagggggccaaaattgcaac-tcctaatactt---aggggccaaaactgctattaa 34232761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 29196604 - 29196679
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||||||||||||||||| |||||| |||||||||||| ||| |  |||| ||| ||||||||| |||||| |||||    
T  29196604 ttgtattttattttgttagaggaccataatcgcaacttcttaaaa--tatagggggccaaaactgttattaaacctaa 29196679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 45522433 - 45522508
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    |||||||||||||||||||||| | |||||||||||||| ||| ||  ||| |||  |||||||||| ||||||||||    
T  45522433 ttgtattttattttgttagggggctaaaatcgcaacttcttaaaac--atagggggtcaaaactgcttttaagcctaa 45522508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 2044747 - 2044672
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||||||||||||||||| ||| || ||||||||| ||| | ||||||   |||| |||||||||||||||| |||||    
T  2044747 attgtattttattttgttatggggccgaaatcgcaatttcatgatactt---aggggccaaaactgctattaaacctaa 2044672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 5899514 - 5899594
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    ||||| ||||||||||||||||||| | ||||||||| |||||||  | ||||||| | ||  ||||||||| ||||||||||    
T  5899514 ggctgaattgtattttattttgttatgagaccaaaattgcaactttgtgatacttagatgg--ccaaaactgttattaagcct 5899594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 5645767 - 5645805
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttc 187  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  5645767 ttgtattttattttgttagggggccaaaatcacaacttc 5645805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 2044938 - 2044999
Alignment:
Q  123 aaaagggccaatacctagcggctggattgtattttattttgttaggggaccaaaatcgcaac 184  Q
    |||||||  ||||| ||| |||| |||||||||||||||||||| |||  ||||||||||||    
T  2044938 aaaagggaaaatacttaggggctagattgtattttattttgttaaggggtcaaaatcgcaac 2044999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 7477409 - 7477372
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||| || ||||||||||||||||||||||||    
T  7477409 ttgtattttaattagttaggggaccaaaatcgcaactt 7477372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 18929381 - 18929337
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    ||||||||||||||||||||||||||| |  ||||||| ||||||    
T  18929381 ggctggattgtattttattttgttaggaggtcaaaatctcaactt 18929337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 17717 - 17639
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagc 222  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||| |||||   | ||| ||||||||||||||||||    
T  17717 ggctggattgtattttattttgttagggtgtcaaaatcgcaacttcctgatact--cagggggccaaaactgctattaagc 17639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 17919 - 17992
Alignment:
Q  150 tgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    ||||||||| ||| ||||||| |||||||||||||||  | ||||||| |  ||| |||||||||||||||||||||    
T  17919 tgtattttactttattagggg-ccaaaatcgcaactttatgatacttaga--ggatcaaaactgctattaagcctaa 17992  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 16323052 - 16322979
Alignment:
Q  146 ggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaag 221  Q
    ||||||||||||||||||||| |||  ||||||||||||||| |||||||  |||||| ||||||||| |||||||    
T  16323052 ggattgtattttattttgttatggggtcaaaatcgcaacttcttaatact--taaggggccaaaactgttattaag 16322979  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 3369926 - 3369871
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  3369926 ggctgaattgtattttattttgttagggggccaaaatcgcaacttcttgatactta 3369871  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 53831224 - 53831152
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcc 223  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||| ||  ||| ||| |||||||||||||||||||    
T  53831224 ttgtagtttatttagttaggggaccaaaatcgcaacttcttaaaac--atagggggccaaaactgctattaagcc 53831152  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 33122859 - 33122902
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttcctaa 191  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  33122859 attgtattttattttgtttggggatcaaaatcgcaacttcctaa 33122902  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 30626656 - 30626587
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaa 220  Q
    |||||||||| |||||||||| | |||||||||||| ||||| ||||||   |||| ||||||||||||||||    
T  30626656 attgtattttcttttgttaggaggccaaaatcgcaatttcctgatactt---aggggccaaaactgctattaa 30626587  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 15845162 - 15845206
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||    
T  15845162 ggctggattgtattttattttgttagaggatcaaaatcgtaactt 15845206  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 11787141 - 11787062
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    |||| |||||||||||||||||| |||||  |||||||||||||| || ||| |||  ||||  |||||||||||||||||||    
T  11787141 ggctcgattgtattttattttgtcagggg-gcaaaatcgcaactttctgatatttaggaggg--caaaactgctattaagcct 11787062  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 11787319 - 11787396
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcc 223  Q
    |||||||||||||||||||||||||||   ||||||||| ||||| || ||||  || |||  |||||||||||||||||||    
T  11787319 ggctggattgtattttattttgttaggaagccaaaatcgtaacttgctgatac--attagg--ccaaaactgctattaagcc 11787396  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 11799308 - 11799229
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    |||| |||||||||||||||||| |||||  |||||||||||||| || ||| |||  ||||  |||||||||||||||||||    
T  11799308 ggctcgattgtattttattttgtcagggg-gcaaaatcgcaactttctgatatttaggaggg--caaaactgctattaagcct 11799229  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 11799486 - 11799563
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcc 223  Q
    |||||||||||||||||||||||||||   ||||||||| ||||| || ||||  || |||  |||||||||||||||||||    
T  11799486 ggctggattgtattttattttgttaggaagccaaaatcgtaacttgctgatac--attagg--ccaaaactgctattaagcc 11799563  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 30064074 - 30064002
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcc 223  Q
    ||||| |||| || ||||||||||||||||||||||||| ||| ||  ||| ||| |||||||| ||||||||||    
T  30064074 ttgtagtttacttagttaggggaccaaaatcgcaacttcttaaaac--atagggggccaaaacttctattaagcc 30064002  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 54953801 - 54953747
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||| ||| ||||||||||||||| ||| | ||||||||||||||||||||||||    
T  54953801 ggctgaattatattttattttgttatgggtc-aaaatcgcaacttcctaatactta 54953747  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 41148556 - 41148615
Alignment:
Q  163 gttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcct 224  Q
    ||||||||||||||||| ||||||| ||| |  |||| ||| ||||||||||||||||||||    
T  41148556 gttaggggaccaaaatcacaacttcttaaaa--tatagggggccaaaactgctattaagcct 41148615  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 49804338 - 49804376
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttc 187  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  49804338 ttgtattttatttttttaggggatcaaaatcgcaacttc 49804376  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 26858416 - 26858379
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||| || ||||||||||||||||||||||||    
T  26858416 ttgtattttaattagttaggggaccaaaatcgcaactt 26858379  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 40489302 - 40489246
Alignment:
Q  130 ccaatacctagcggctggattgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    ||||||| ||| |||||  |||||||||| || |||||||| |||||||||||||||    
T  40489302 ccaatacataggggctgttttgtattttaattagttagggggccaaaatcgcaactt 40489246  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 47742303 - 47742263
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaacttcct 189  Q
    ||||| ||||||| |||||||| ||||||||||||||||||    
T  47742303 ttgtagtttatttagttagggggccaaaatcgcaacttcct 47742263  T

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Target: scaffold1088 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 2105 - 2160
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  2105 ggctgaattgtattttattttgttagggggccaaaatcgcaactttctaatgctta 2160  T

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Target: scaffold0010 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 128150 - 128232
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcctaa 226  Q
    |||||||||||||||||||||| || ||| ||||||| ||||||| || ||||||| |  || |||||||||||||||| |||||    
T  128150 ggctggattgtattttattttggtaagggcccaaaattgcaactttctgatacttaga--gggccaaaactgctattaaccctaa 128232  T

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Target: scaffold0172 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 9872 - 9950
Alignment:
Q  142 ggctggattgtattttattttgttaggggaccaaaatcgcaacttcctaatacttataagggaccaaaactgctattaagcc 223  Q
    |||| |||||||||||||||| |||||||  ||||||||||||||||||||| ||| | |||  ||||||||||||||||||    
T  9872 ggctagattgtattttattttattagggg-tcaaaatcgcaacttcctaata-tta-agggggtcaaaactgctattaagcc 9950  T

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Target: scaffold0092 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 37856 - 37808
Alignment:
Q  148 attgtattttattttgttaggggaccaaaatcgcaacttcctaatactta 197  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||    
T  37856 attgtattttattttgttagggg-tcaaaatcgcaacttcctgatactta 37808  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 152248 - 152306
Alignment:
Q  295 tacaatatcatggaggacttaaattactattaaa-ttttatatagactaaacttgaaaa 352  Q
    |||||||| ||| |||||| ||||||| |||||| ||||||| ||||||||||||||||    
T  152248 tacaatattatgaaggactaaaattaccattaaaattttataaagactaaacttgaaaa 152306  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 63107 - 63070
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||| || ||||||||||||||||||||||||    
T  63107 ttgtattttaattagttaggggaccaaaatcgcaactt 63070  T

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Target: scaffold0047; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 63305 - 63342
Alignment:
Q  149 ttgtattttattttgttaggggaccaaaatcgcaactt 186  Q
    |||||||||| || ||||||||||||||||||||||||    
T  63305 ttgtattttaattagttaggggaccaaaatcgcaactt 63342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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