View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556-Insertion-9 (Length: 117)
Name: NF5556-Insertion-9
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 55; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 12202658 - 12202555
Alignment:
| Q |
8 |
agaacatcatcatatatatgtctatatctaagagaagtaaggatctctccattt--nnnnnnnnnntggagtagtattaagttatataaaaaatgaatta |
105 |
Q |
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| T |
12202658 |
agaacatcattatatatatgtttatatctaagagaagtaaggatctctccatttaaaaaaaaaaaatggagtagtattaagttatataaaaaatgaatta |
12202559 |
T |
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| Q |
106 |
cttg |
109 |
Q |
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|||| |
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| T |
12202558 |
cttg |
12202555 |
T |
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