View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_high_1 (Length: 602)
Name: NF5556_high_1
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 166 - 581
Target Start/End: Complemental strand, 24561877 - 24561480
Alignment:
| Q |
166 |
caaatgtctaaatcataagatataattagatgcacgtgtaaaatagttatgcgctctaagtacatacaaattaaatcattaactcaacctcacactatat |
265 |
Q |
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| T |
24561877 |
caaatgtataaatcataagatataattagatgcacgtgtaaaata----------------acatacaaattaaatcattaactcaacctcacactat-- |
24561796 |
T |
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| Q |
266 |
tgtaattcaacttactttttaattttatttatggtcactaaattaccgcaggcactgaagaagaggctgcagaagcatacgacatagcagcaataaaatt |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24561795 |
tgtaattcaacttactttttaattttatttatggtcactaaattaccacaggcactgaagaagaggctgcagaagcatacgacatagcagcaataaaatt |
24561696 |
T |
|
| Q |
366 |
cagaggactcaacgctgtaacaaactttgacatgactcgttatgacgtgaaagcaattctcgaaagcaatacacttccaatcggaggaggagctgcaaaa |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
24561695 |
cagaggactcaacgctgtaacaaactttgacatgactcgttacgacgtgaaagccattctcgaaagcaacacactgccaattggaggaggagctgcaaaa |
24561596 |
T |
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| Q |
466 |
agactaaaagaagcacaagctctagaaacttcgagaaaacgcgaagaaatgcttgcactcaactcttcatctttccaatatggaacatcaagctccagta |
565 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |
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| T |
24561595 |
agactaaaagaagcacaagctctagaaacttcgagaaaacgcgaagaaatgcttgcacttaactcatcatctttccaatatggaacatcaagctctagta |
24561496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 24562101 - 24561960
Alignment:
| Q |
10 |
attattctaaacaaaaatttaatttgtatgcgccaacgatgtgaaacacttttatagtacatatactttctatgttctaaattataagcaaaagtaattc |
109 |
Q |
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| T |
24562101 |
attattctaaacaaaaatttaatttgtatgcaccaacaatatgaaacatttttatagtacatatactttctatgttttaaattataagcaaaagtaattc |
24562002 |
T |
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| Q |
110 |
aacaaaaaatggtgtatttggtccaaaattttaaccaaatat |
151 |
Q |
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| T |
24562001 |
aacaaaaaatgatgcatttggtccaaaattttaaccaaatat |
24561960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 53233918 - 53233820
Alignment:
| Q |
315 |
aggcactgaagaagaggctgcagaagcatacgacatagcagcaataaaattcagaggactcaacgctgtaacaaactttgacatgactcgttatgacgt |
413 |
Q |
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| T |
53233918 |
aggcactcaagaagaagctgcagaagcgtatgatattgcagcaatcaaatttagaggactaaatgcagtaacaaattttgacatgagtcggtacgacgt |
53233820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 325 - 504
Target Start/End: Complemental strand, 41963863 - 41963684
Alignment:
| Q |
325 |
gaagaggctgcagaagcatacgacatagcagcaataaaattcagaggactcaacgctgtaacaaactttgacatgactcgttatgacgtgaaagcaattc |
424 |
Q |
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|||||||||||||||||||| |||||||| ||||| |||||||||||| | ||||| ||||||||||||||||||| |||||| ||||||||||| |||| |
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| T |
41963863 |
gaagaggctgcagaagcatatgacatagctgcaatcaaattcagaggattaaacgcagtaacaaactttgacatgaatcgttacgacgtgaaagcgattc |
41963764 |
T |
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| Q |
425 |
tcgaaagcaatacacttccaatcggaggaggagctgcaaaaagactaaaagaagcacaagctctagaaacttcgagaaaa |
504 |
Q |
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| T |
41963763 |
ttgaaagtatcactctcccaataggaggaggtgctgcaaaaagattaaaagaagcacaagctctagaatcttctagaaaa |
41963684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 400
Target Start/End: Complemental strand, 30618392 - 30618307
Alignment:
| Q |
315 |
aggcactgaagaagaggctgcagaagcatacgacatagcagcaataaaattcagaggactcaacgctgtaacaaactttgacatga |
400 |
Q |
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||||||| |||||||||| ||||| ||||| || | ||||||||||||||||||||||| | || || |||||||||||||||| |
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| T |
30618392 |
aggcactcaagaagaggcagcagaggcatatgatgtggcagcaataaaattcagaggactgagtgcagttacaaactttgacatga |
30618307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 22547534 - 22547574
Alignment:
| Q |
113 |
aaaaaatggtgtatttggtccaaaattttaaccaaatatat |
153 |
Q |
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| T |
22547534 |
aaaaaatgatgtatttggtctaaaatttgaaccaaatatat |
22547574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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