View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_high_15 (Length: 302)
Name: NF5556_high_15
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 52087400 - 52087688
Alignment:
| Q |
1 |
atgttgtagaaccaagtcgttatcgtgaacctcggtgacccaattaagagccatggtttcatcaactataggcttgttatctttgatgactgccaagtgt |
100 |
Q |
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| T |
52087400 |
atgttgtagaaccaagtcgttatcgtgaacctcggtgacccaattaagagccatggtttcatcaactataggcttgttatctttgatgactgccaagtgt |
52087499 |
T |
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| Q |
101 |
gtagggtgcactgcataggcatggagatcttccttggatctgaatctactatggatcatgtgagtgaaattgaaagatgaaatggaattggaggattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52087500 |
gtagggtgcactgcataggcatggagatcttccttggatctgaatctactatggatcatgtgagtgaaattgaaagatgaaatggaattggaggattgaa |
52087599 |
T |
|
| Q |
201 |
tacttaccaacggacccatagtcaagtgaagtggctcttcaagagagataagggaattcacttgcttcaccatggaatcaatcgctgat |
289 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52087600 |
tacttaccaacggacccatagttaagtgaagtggctcttcaagagagataagggaattcacttgcttcaccatggaatcaatcgctgat |
52087688 |
T |
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