View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_high_2 (Length: 527)
Name: NF5556_high_2
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_high_2 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 48844640 - 48845170
Alignment:
| Q |
1 |
tcttatcagatcaaccatatcacaaaattatcttgctaccaagaatcagtttattgtttgtcccgctgaaaagcaaacttacggaagaaagaagggattc |
100 |
Q |
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| T |
48844640 |
tcttatcagatcaaccatatcacaaaattatcttgctaccaagaatcagtttattgtttgtcccgctgaaaagcaaacttacggaagaaagaagcgattc |
48844739 |
T |
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| Q |
101 |
atgctggatagggtcaatgtaggacactacttcagaaagcgattttaaagttgtcttgaatcatgtcataaacattaataaaatggtcagcactgtgaat |
200 |
Q |
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| T |
48844740 |
atgctggatagggtcaatgtaggacactacttcagaaagcgattttaaagttgtcttgaatcatgtcataaacattaataaaatggtcagcactgtgaat |
48844839 |
T |
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| Q |
201 |
ttccataggcctattaaaataatatcaaatttaagtgtattatgaactttaactaaagaaaacccaccaaaagttgagcagcgtcgtgagacttaagatg |
300 |
Q |
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| T |
48844840 |
ttccataggcctattaataaaataggcctattaagtttattatgaactttaactaaagaaaacccaccaaaagttgagcagcgtcgtgagacttaagatg |
48844939 |
T |
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| Q |
301 |
cttttttggttgcaaacacttaacaagctcggcgtagttctctccaccatcctgaaccacaagaatcaacccatc---nnnnnnnnttaataataaagtc |
397 |
Q |
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| T |
48844940 |
cttttttggttgcaaacacttaacaagctcggcgtagttctctccaccatcctgaaccacaagaatcaacgcatcaaaaaaaaaaaataataataaagtc |
48845039 |
T |
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| Q |
398 |
tacttcctttaatgatatttattggttatcaaattgaacaaaagctgtggctaacagtttctgaaatgctatgaa-aactaccatagacactgacactta |
496 |
Q |
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| T |
48845040 |
tacttactataatgatatttattggttatcaaattgaacaaaagctgtggcaaacagtttctgaaatgctatgaagcactaccatagacactgacacttg |
48845139 |
T |
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| Q |
497 |
gacacgaaataataatttgagaaaatgacat |
527 |
Q |
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| T |
48845140 |
gacacgaaataataatttgagaaaatgacat |
48845170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 483 - 527
Target Start/End: Complemental strand, 41558756 - 41558713
Alignment:
| Q |
483 |
gacactgacacttagacacgaaataataatttgagaaaatgacat |
527 |
Q |
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| T |
41558756 |
gacactgacacattgacac-aaataataatttgagaaaatgacat |
41558713 |
T |
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