View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_high_22 (Length: 251)
Name: NF5556_high_22
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6543185 - 6543420
Alignment:
| Q |
1 |
ctacgaggaagaagcttctcaactgttgaagttgtatgaagagaaaaaagatgtttccaataggatgttgaaaaaagattttaagccgtgagattggcaa |
100 |
Q |
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| T |
6543185 |
ctacgaggaagaagcttctcaactgttgaagttgtatgaagagaaaaaagatgtttccaataggatgttgaaaaaagattttaagccgtgagattggcga |
6543284 |
T |
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| Q |
101 |
ccacaatctgagagaagttacatcaagggtttttgcgacatgaccatggtcatctactggatttgacggtgactgcaatctagaaccttgttttgaagat |
200 |
Q |
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| T |
6543285 |
ccacaatctgagagaagttacatcaagggtctttgcgacacgaccatggtcatctactggatttgacggtgactgcaatctagaaccttgttttgaagat |
6543384 |
T |
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| Q |
201 |
agcactgatatgcaagtggtgtctcacatctgtgat |
236 |
Q |
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| T |
6543385 |
agcactgatatgcaagtggtgtctcacatctgtgat |
6543420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 6540797 - 6540900
Alignment:
| Q |
5 |
gaggaagaagcttctcaactgttgaagttgtatgaagagaaaaaagatgtttccaataggatgttgaaaaaagattttaagccgtgagattggcaaccac |
104 |
Q |
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| T |
6540797 |
gaggaagaagcttctcagctgttgaagttgtatgaagagaaaatagatgttttcaattgg-tgttgaaaaaagattttaagctgggagattcgcgagcac |
6540895 |
T |
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| Q |
105 |
aatct |
109 |
Q |
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||||| |
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| T |
6540896 |
aatct |
6540900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 6534440 - 6534488
Alignment:
| Q |
5 |
gaggaagaagcttctcaactgttgaagttgtatgaagagaaaaaagatg |
53 |
Q |
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| T |
6534440 |
gaggaagaagcatctcagctgttgaagttgtatgaagagaaaagagatg |
6534488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 6534561 - 6534605
Alignment:
| Q |
173 |
ctgcaatctagaaccttgttttgaagatagcactgatatgcaagt |
217 |
Q |
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| T |
6534561 |
ctgcaatttagaaccttgttttgaagatggcacagatatgcaagt |
6534605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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