View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_high_23 (Length: 250)
Name: NF5556_high_23
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 36203097 - 36203312
Alignment:
| Q |
17 |
atatgatcataatgttttatgtcaaattatccaagttatttatatacgataggttctctaatctcagtagagttttcttcatagacaaaagtcgtgacca |
116 |
Q |
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| T |
36203097 |
atatgatcataatgttttatgttaaattattcaagttatttatatacgataggttctctaatctcagtagagttttttccatggacaaaagtcgtgacca |
36203196 |
T |
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| Q |
117 |
aatctatgatcacttgtttaagttatctaagtctcttaccactttaacaaactcattgttactgtacctaaaataatatttattatttattgttataaga |
216 |
Q |
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|| |||| |||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36203197 |
aacctataatcatttgtttaagttatctaagtctcttaccattttaacaaactcatcgttactgtacctaaaataaaatttattatttattgttataaga |
36203296 |
T |
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| Q |
217 |
aagagacttggttagt |
232 |
Q |
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|||| ||||||||||| |
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| T |
36203297 |
aagaaacttggttagt |
36203312 |
T |
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