View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5556_high_7 (Length: 393)

Name: NF5556_high_7
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5556_high_7
NF5556_high_7
[»] chr4 (1 HSPs)
chr4 (16-306)||(29125400-29125692)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 29125692 - 29125400
Alignment:
Q  16 caagaagctaaattatgcgttatgatcctgaattattagtgaatcgagcaaaaccctnnnnnnnn--gtgagaattggaagagtgaaagcaacctgaaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  29125692 caagaagctaaattatgcgttatgatcctgaattattagtgaatcgagcaaaaccctaaaaaaaaaagtgagaattggaagagtgaaagcaacctgaaaa 29125593  T
Q  114 gtatgagctggcaattgccagccatgttttctgaccatgtctgactgtgtactctgaagtgaagttgctttggagaagaatacagatttacactgacagt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29125592 gtatgagctggcaattgccagccatgttttctgaccatgtctgactgtgtactctgaagtgaagttgctttggagaagaatacagatttacactgacagt 29125493  T
Q  214 gtgtgtcactctctcgtcgtctcgttctaaaaagcttttaactaccaaacaaccgcactcagttgctttctatttccagctgcacaaagactc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29125492 gtgtgtcactctctcgtcgtctcgttctaaaaagcttttaactaccaaacaaccgcactcagttgctttctatttccagctgcacaaagactc 29125400  T

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