View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5556_high_8 (Length: 366)

Name: NF5556_high_8
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5556_high_8
NF5556_high_8
[»] chr3 (18 HSPs)
chr3 (180-362)||(43772856-43773037)
chr3 (186-301)||(11004157-11004273)
chr3 (186-303)||(3297145-3297263)
chr3 (312-365)||(47115569-47115622)
chr3 (318-362)||(6510218-6510262)
chr3 (318-366)||(29313791-29313839)
chr3 (318-362)||(53806806-53806850)
chr3 (318-361)||(12766942-12766985)
chr3 (318-365)||(49263032-49263079)
chr3 (312-362)||(14248824-14248874)
chr3 (318-354)||(7248868-7248904)
chr3 (317-353)||(8827444-8827480)
chr3 (318-354)||(20957187-20957223)
chr3 (318-362)||(25110071-25110115)
chr3 (310-366)||(41749381-41749437)
chr3 (318-362)||(49872959-49873003)
chr3 (313-353)||(49880756-49880796)
chr3 (318-354)||(51460781-51460817)
[»] chr8 (18 HSPs)
chr8 (187-292)||(13145131-13145237)
chr8 (186-304)||(44609063-44609181)
chr8 (318-362)||(14329610-14329654)
chr8 (196-297)||(26378278-26378381)
chr8 (318-353)||(27987545-27987580)
chr8 (318-353)||(28044847-28044882)
chr8 (318-353)||(33641153-33641188)
chr8 (318-362)||(27543414-27543459)
chr8 (312-353)||(27543644-27543685)
chr8 (312-361)||(43945166-43945215)
chr8 (318-362)||(960507-960551)
chr8 (318-362)||(3912490-3912534)
chr8 (318-353)||(24971196-24971232)
chr8 (318-362)||(25277716-25277760)
chr8 (318-362)||(27198147-27198191)
chr8 (318-362)||(27987300-27987344)
chr8 (318-362)||(28044602-28044646)
chr8 (318-362)||(29309568-29309612)
[»] chr4 (11 HSPs)
chr4 (187-303)||(1990832-1990949)
chr4 (186-304)||(20357024-20357143)
chr4 (186-301)||(26439795-26439911)
chr4 (318-362)||(5401764-5401809)
chr4 (318-362)||(21780125-21780169)
chr4 (318-366)||(29431642-29431690)
chr4 (318-361)||(50138491-50138534)
chr4 (318-364)||(27579517-27579563)
chr4 (318-354)||(550676-550712)
chr4 (318-366)||(24215747-24215795)
chr4 (323-363)||(25619229-25619269)
[»] chr1 (12 HSPs)
chr1 (186-301)||(9022270-9022386)
chr1 (312-354)||(15336372-15336414)
chr1 (318-362)||(2472594-2472638)
chr1 (315-362)||(2059436-2059483)
chr1 (318-361)||(28410917-28410960)
chr1 (312-366)||(44826078-44826132)
chr1 (318-362)||(33573892-33573937)
chr1 (313-366)||(35034301-35034354)
chr1 (313-361)||(7112492-7112540)
chr1 (318-366)||(16698872-16698920)
chr1 (318-362)||(18458812-18458856)
chr1 (318-362)||(47022079-47022123)
[»] chr2 (18 HSPs)
chr2 (315-365)||(35007663-35007714)
chr2 (186-300)||(1499600-1499715)
chr2 (315-362)||(27866430-27866477)
chr2 (312-353)||(20182513-20182554)
chr2 (318-362)||(22116158-22116202)
chr2 (312-356)||(29835099-29835143)
chr2 (318-361)||(19493459-19493502)
chr2 (312-362)||(33641129-33641179)
chr2 (318-362)||(18665678-18665723)
chr2 (318-362)||(85680-85723)
chr2 (318-362)||(17328095-17328139)
chr2 (318-362)||(19641449-19641493)
chr2 (318-362)||(19840042-19840086)
chr2 (318-362)||(20182267-20182311)
chr2 (318-366)||(32449690-32449738)
chr2 (318-362)||(34635709-34635753)
chr2 (318-362)||(37147554-37147598)
chr2 (315-355)||(41859652-41859691)
[»] chr7 (22 HSPs)
chr7 (318-366)||(13797617-13797665)
chr7 (315-361)||(29141168-29141214)
chr7 (189-299)||(8482532-8482644)
chr7 (312-361)||(13279428-13279477)
chr7 (318-366)||(38192965-38193014)
chr7 (318-366)||(44568851-44568899)
chr7 (318-366)||(44569084-44569132)
chr7 (318-362)||(45163916-45163960)
chr7 (318-361)||(31186671-31186714)
chr7 (318-353)||(35913303-35913338)
chr7 (318-364)||(25077791-25077837)
chr7 (312-366)||(38193200-38193254)
chr7 (315-353)||(39065383-39065421)
chr7 (312-362)||(39580176-39580226)
chr7 (318-355)||(6269531-6269568)
chr7 (318-362)||(14079006-14079051)
chr7 (318-362)||(14389034-14389079)
chr7 (313-362)||(48104738-48104787)
chr7 (312-360)||(3307688-3307736)
chr7 (315-366)||(4517865-4517917)
chr7 (318-354)||(19272467-19272503)
chr7 (318-362)||(24845641-24845685)
[»] chr6 (9 HSPs)
chr6 (318-362)||(31116482-31116526)
chr6 (318-356)||(22574046-22574084)
chr6 (312-361)||(13114395-13114444)
chr6 (318-362)||(31852002-31852047)
chr6 (318-362)||(33751932-33751977)
chr6 (318-362)||(13114635-13114679)
chr6 (318-362)||(19325616-19325660)
chr6 (318-362)||(22362947-22362991)
chr6 (318-362)||(31851761-31851805)
[»] scaffold0014 (1 HSPs)
scaffold0014 (186-272)||(11281-11368)
[»] scaffold0010 (1 HSPs)
scaffold0010 (313-362)||(26306-26355)
[»] scaffold0809 (1 HSPs)
scaffold0809 (318-354)||(4015-4051)
[»] scaffold0384 (1 HSPs)
scaffold0384 (312-356)||(4443-4487)
[»] chr5 (8 HSPs)
chr5 (318-366)||(29104447-29104495)
chr5 (312-356)||(40657918-40657962)
chr5 (313-362)||(16504956-16505006)
chr5 (313-362)||(12399596-12399645)
chr5 (312-360)||(2870896-2870944)
chr5 (318-361)||(5747535-5747579)
chr5 (318-362)||(10976757-10976801)
chr5 (318-354)||(22551525-22551561)
[»] scaffold0769 (1 HSPs)
scaffold0769 (318-362)||(4161-4205)
[»] scaffold0142 (1 HSPs)
scaffold0142 (313-353)||(34845-34885)
[»] scaffold0031 (1 HSPs)
scaffold0031 (318-366)||(1830-1878)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 180 - 362
Target Start/End: Complemental strand, 43773037 - 43772856
Alignment:
Q  180 aaatatcttgaatttcaaaaatgaattaaatatttttccaaacaacgaatttagtccaaatcaattcaaatactccaaaagattacattccctggttaaa 279  Q
    |||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43773037 aaatatcttgaatttcaaaaatgaattaaatattttcccaaacagtgaatttagtccaaatcaattcaaatactccaaaagattacattccctagttaaa 43772938  T
Q  280 gttctctatccaaacacactctaaagaaattctttggattaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||    
T  43772937 gttccctatccaaacacactctaaagaaattctttgggttaataggtctttac-ccccgtaatatagatcatttccgattttc 43772856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 186 - 301
Target Start/End: Original strand, 11004157 - 11004273
Alignment:
Q  186 cttgaatttcaaaaatgaattaaatatttttccaaacaacg-aatttagtccaaatcaattcaaatactccaaaagattacattccctggttaaagttct 284  Q
    ||||||||| |||||||| ||||||||||| |||||||| | ||||| |  ||| |||||| |||| |||||||| ||||||||||||  ||||| | ||    
T  11004157 cttgaatttaaaaaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcattaaaatact 11004256  T
Q  285 ctatccaaacacactct 301  Q
    |||||||||||||||||    
T  11004257 ctatccaaacacactct 11004273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 186 - 303
Target Start/End: Complemental strand, 3297263 - 3297145
Alignment:
Q  186 cttgaatttcaaaaatgaattaaatatttttccaaacaacg-aatttagtccaaatcaattcaaatactccaaaagattacattccctggttaaagttct 284  Q
    ||||||||| |||||||| ||||||||| | |||||||| | ||||| |  ||| |||||| |||| |||||||| ||||||||||||  ||||| | ||    
T  3297263 cttgaattttaaaaatgacttaaatattctcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcattaaaatact 3297164  T
Q  285 ctatccaaacacactctaa 303  Q
    |||||||||||||||||||    
T  3297163 ctatccaaacacactctaa 3297145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 47115622 - 47115569
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcgattttctcc 365  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  47115622 tttgggttaataggtctttaccccctgtaatataggtcattttcggttttctcc 47115569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 6510218 - 6510262
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||    
T  6510218 ttaataggtctttaccccctgtaatataggtcatttccgattttc 6510262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 29313791 - 29313839
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    |||||||||||||||| || ||||||||| ||||||||| |||||||||    
T  29313791 ttaataggtctttacctcctgtaatataggtcattttcggttttctccc 29313839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 53806850 - 53806806
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||    
T  53806850 ttaataggtctttaccccttgtaatataggtcattttcgattttc 53806806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 12766942 - 12766985
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgatttt 361  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||    
T  12766942 ttaataggtctttaccccttgtaatatagatcattttcggtttt 12766985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 49263032 - 49263079
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttctcc 365  Q
    |||||||||||||||||||  |||||||||||| ||| ||||||||||    
T  49263032 ttaataggtctttaccccctataatatagatcacttttgattttctcc 49263079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 14248874 - 14248824
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||| |||||||||||||||||||||||| |||| |||||| || |||||    
T  14248874 tttgggttaataggtctttaccccccgtaaaataggtcatttccggttttc 14248824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 7248868 - 7248904
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcatttt 354  Q
    |||||||| |||||||||| |||||||||||||||||    
T  7248868 ttaataggcctttaccccctgtaatatagatcatttt 7248904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 8827480 - 8827444
Alignment:
Q  317 attaataggtctttaccccccgtaatatagatcattt 353  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  8827480 attaataggtctttaccccctgtaatataggtcattt 8827444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 20957223 - 20957187
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcatttt 354  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  20957223 ttaataggtctttaccccctgtaatatagattatttt 20957187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 25110115 - 25110071
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||| ||| ||||||||| ||||||||| |||||    
T  25110115 ttaataggtctttacaccctgtaatataggtcattttcggttttc 25110071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 41749381 - 41749437
Alignment:
Q  310 tctttggattaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    ||||||| |||||||| |||||||||  ||||||||| ||| ||| |||||||||||    
T  41749381 tctttgggttaataggcctttaccccttgtaatataggtcacttttgattttctccc 41749437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 49873003 - 49872959
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||    
T  49873003 ttaataggtctttaccccctgtaatataggtcatttccggttttc 49872959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 49880796 - 49880756
Alignment:
Q  313 ttggattaataggtctttaccccccgtaatatagatcattt 353  Q
    |||| ||||||||||||||||||| ||||||||| ||||||    
T  49880796 ttgggttaataggtctttaccccctgtaatataggtcattt 49880756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 51460817 - 51460781
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcatttt 354  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  51460817 ttaataggtctttaccccctgtaatataggtcatttt 51460781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 292
Target Start/End: Complemental strand, 13145237 - 13145131
Alignment:
Q  187 ttgaatttcaaaaatgaattaaatatttttccaaacaacg-aatttagtccaaatcaattcaaatactccaaaagattacattccctggttaaagttctc 285  Q
    |||||||| |||||||| |||||||||||||||||||| | ||| | | |||| |||||| ||||||||||||| ||||||||||||  ||||| |||||    
T  13145237 ttgaattttaaaaatgacttaaatatttttccaaacaatggaatatgggccaagtcaatttaaatactccaaaaaattacattccctcattaaaattctc 13145138  T
Q  286 tatccaa 292  Q
    |||||||    
T  13145137 tatccaa 13145131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 44609181 - 44609063
Alignment:
Q  186 cttgaatttcaaaaatgaattaaatatttttccaaacaa-cgaatttagtccaaatcaattcaaatactccaaaagattacattccctggttaaagttct 284  Q
    ||||||||| |||||||| ||||||||||| ||||||||  |||||| |  ||| |||||| ||||||||||||| ||||| ||||||   |||| | ||    
T  44609181 cttgaattttaaaaatgacttaaatattttcccaaacaatagaatttgggtcaagtcaatttaaatactccaaaa-attactttccctcactaaaatgct 44609083  T
Q  285 ctatccaaacacactctaaa 304  Q
     |||||||||||||||||||    
T  44609082 ttatccaaacacactctaaa 44609063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 14329654 - 14329610
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||    
T  14329654 ttaataggtctttaccccctgtaatataggtcattttcggttttc 14329610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 26378381 - 26378278
Alignment:
Q  196 aaaaatgaattaaatatttttccaaacaacg-aatttagtccaaatcaattcaaatactccaaaag-attacattccctggttaaagttctctatccaaa 293  Q
    |||||||| |||||||| || |||||||  | ||||| | ||||||||||| ||||||| |||||  |||||||| |||  ||||| |||||||||||||    
T  26378381 aaaaatgacttaaatatattcccaaacagtggaatttgggccaaatcaatttaaatacttcaaaaatattacatttcctcattaaaattctctatccaaa 26378282  T
Q  294 caca 297  Q
    ||||    
T  26378281 caca 26378278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 353
Target Start/End: Complemental strand, 27987580 - 27987545
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattt 353  Q
    ||||||||||||||||||| ||||||||||||||||    
T  27987580 ttaataggtctttaccccctgtaatatagatcattt 27987545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 353
Target Start/End: Complemental strand, 28044882 - 28044847
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattt 353  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28044882 ttaataggtctttaccccctgtaatatagatcattt 28044847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 353
Target Start/End: Complemental strand, 33641188 - 33641153
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattt 353  Q
    |||||||||||||||||| |||||||||||||||||    
T  33641188 ttaataggtctttacccctcgtaatatagatcattt 33641153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 27543414 - 27543459
Alignment:
Q  318 ttaataggtctttacccccc-gtaatatagatcattttcgattttc 362  Q
    |||||||||||||||||||| ||||||||| ||||||||| |||||    
T  27543414 ttaataggtctttacccccctgtaatataggtcattttcggttttc 27543459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 27543685 - 27543644
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattt 353  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||    
T  27543685 tttgggttaataggtctttaccccctgtaatataggtcattt 27543644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 43945166 - 43945215
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcgatttt 361  Q
    ||||| ||||||||||||||||||| ||||||||  ||||||||| ||||    
T  43945166 tttgggttaataggtctttaccccctgtaatatatgtcattttcggtttt 43945215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 960551 - 960507
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||    
T  960551 ttaataggtctttaccccctgtaatataggtcatttccggttttc 960507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 3912534 - 3912490
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    |||||| |||||||||||| ||||||||| ||||||||| |||||    
T  3912534 ttaataagtctttaccccctgtaatataggtcattttcggttttc 3912490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 353
Target Start/End: Complemental strand, 24971232 - 24971196
Alignment:
Q  318 ttaataggtctttacccccc-gtaatatagatcattt 353  Q
    |||||||||||||||||||| ||||||||||||||||    
T  24971232 ttaataggtctttacccccctgtaatatagatcattt 24971196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 25277760 - 25277716
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||    
T  25277760 ttaataggtctttaccccctgtaatataggtcatttccggttttc 25277716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 27198147 - 27198191
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    |||||||||||||| |||| ||||||||| ||||||||| |||||    
T  27198147 ttaataggtctttatcccctgtaatataggtcattttcggttttc 27198191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 27987300 - 27987344
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    |||||||||||||||||||  |||||||| ||||||||| |||||    
T  27987300 ttaataggtctttaccccctataatataggtcattttcggttttc 27987344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 28044602 - 28044646
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    |||||||||||||||||||  |||||||| ||||||||| |||||    
T  28044602 ttaataggtctttaccccctataatataggtcattttcggttttc 28044646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 29309568 - 29309612
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||    
T  29309568 ttaataggtctttaccccctgtaatataggtcatttccggttttc 29309612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 1990949 - 1990832
Alignment:
Q  187 ttgaatttcaaaaatgaattaaatatttttccaaacaac-gaatttagtccaaatcaattcaaatactccaaaagattacattccctggttaaagttctc 285  Q
    |||||||| |||||||| ||||||||||| ||||||||  |||||| |  ||| |||||| |||| |||||||| ||||||||||||  ||||| | ||     
T  1990949 ttgaattttaaaaatgacttaaatattttcccaaacaatagaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcattaaaatactt 1990850  T
Q  286 tatccaaacacactctaa 303  Q
    ||||||||||||||||||    
T  1990849 tatccaaacacactctaa 1990832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 20357143 - 20357024
Alignment:
Q  186 cttgaatttcaaaaatgaattaaatatttttccaaacaacg-aatttagtccaaatcaattcaaatactccaaaagattacattccctggttaaagttct 284  Q
    ||||||||| |||||||| ||||||||||| |||||||| | ||||| |  ||| |||||| ||||| | ||||| ||||| ||||||  ||||| | ||    
T  20357143 cttgaattttaaaaatgagttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaatatttcaaaaaattactttccctcattaaaatgct 20357044  T
Q  285 ctatccaaacacactctaaa 304  Q
    ||||||||||||||||||||    
T  20357043 ctatccaaacacactctaaa 20357024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 301
Target Start/End: Original strand, 26439795 - 26439911
Alignment:
Q  186 cttgaatttcaaaaatgaattaaatatttttccaaacaa-cgaatttagtccaaatcaattcaaatactccaaaagattacattccctggttaaagttct 284  Q
    ||||||||| |||||||| ||||||||||||||||||||  |||||| |  ||| |||||| |||| ||| |||| |||||||| |||  ||||| | ||    
T  26439795 cttgaattttaaaaatgacttaaatatttttccaaacaatagaatttgggtcaagtcaatttaaattctctaaaaaattacatttcctcattaaaatact 26439894  T
Q  285 ctatccaaacacactct 301  Q
    |||| ||||||||||||    
T  26439895 ctattcaaacacactct 26439911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 5401764 - 5401809
Alignment:
Q  318 ttaataggtctttacccccc-gtaatatagatcattttcgattttc 362  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||    
T  5401764 ttaataggtctttacccccctgtaatataggtcattttcgattttc 5401809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 21780125 - 21780169
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||    
T  21780125 ttaataggtctttaccccctgtaatataggtcattttcggttttc 21780169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 29431690 - 29431642
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    |||||||||||||||| |||||||||||| | |||| ||||||||||||    
T  29431690 ttaataggtctttacctcccgtaatataggtgatttccgattttctccc 29431642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 50138491 - 50138534
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgatttt 361  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||    
T  50138491 ttaataggtctttaccccctgtaatataggtcattttcggtttt 50138534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 27579517 - 27579563
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttctc 364  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||||    
T  27579517 ttaataggtctttaccccctgtaatataggtcatttccggttttctc 27579563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 550676 - 550712
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcatttt 354  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  550676 ttaataggtctttaccccctgtaatataggtcatttt 550712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 24215795 - 24215747
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    ||||||||||||||||||| ||||||||| ||||||  | |||||||||    
T  24215795 ttaataggtctttaccccctgtaatataggtcatttctggttttctccc 24215747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 25619269 - 25619229
Alignment:
Q  323 aggtctttaccccccgtaatatagatcattttcgattttct 363  Q
    |||||||| ||||| |||||||| |||||||||||||||||    
T  25619269 aggtctttgccccctgtaatatatatcattttcgattttct 25619229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 301
Target Start/End: Original strand, 9022270 - 9022386
Alignment:
Q  186 cttgaatttcaaaaatgaattaaatatttttccaaacaacg-aatttagtccaaatcaattcaaatactccaaaagattacattccctggttaaagttct 284  Q
    ||||||||| |||||||| ||||||||||| |||||||| | ||||| |  ||| |||||| ||||||||||||| ||||| ||||||  ||||| | ||    
T  9022270 cttgaattttaaaaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaatactccaaaaaattactttccctcattaaaatgct 9022369  T
Q  285 ctatccaaacacactct 301  Q
     ||||||||||||||||    
T  9022370 ttatccaaacacactct 9022386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 15336372 - 15336414
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcatttt 354  Q
    ||||||||||||||||||||||||| ||||||||| |||||||    
T  15336372 tttggattaataggtctttaccccctgtaatataggtcatttt 15336414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 2472638 - 2472594
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||    
T  2472638 ttaataggtctttaccccctgtaatataggttattttcgattttc 2472594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 2059483 - 2059436
Alignment:
Q  315 ggattaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    |||||||||||||||||||||| ||||||||| ||||||  |||||||    
T  2059483 ggattaataggtctttaccccctgtaatataggtcatttctgattttc 2059436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 28410917 - 28410960
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgatttt 361  Q
    |||||||||||||| |||| ||||||||| ||||||||||||||    
T  28410917 ttaataggtctttatcccctgtaatataggtcattttcgatttt 28410960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 44826078 - 44826132
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    ||||| |||||| |||||||||||| |||||| || ||||||||| |||||||||    
T  44826078 tttgggttaataagtctttaccccctgtaatagaggtcattttcggttttctccc 44826132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 33573937 - 33573892
Alignment:
Q  318 ttaataggtctttacccccc-gtaatatagatcattttcgattttc 362  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||    
T  33573937 ttaataggtctttacctccctgtaatataggtcattttcgattttc 33573892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 35034354 - 35034301
Alignment:
Q  313 ttggattaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    |||| |||||||||||||| |||| ||||||||| |||||| || |||||||||    
T  35034354 ttgggttaataggtctttatcccctgtaatataggtcatttccggttttctccc 35034301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 7112492 - 7112540
Alignment:
Q  313 ttggattaataggtctttaccccccgtaatatagatcattttcgatttt 361  Q
    |||| ||||||||||||||||||| ||||||||  ||||||||| ||||    
T  7112492 ttgggttaataggtctttaccccctgtaatatatgtcattttcggtttt 7112540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 16698872 - 16698920
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    ||||||||||||||||| | |||||||||||||||| || |||| ||||    
T  16698872 ttaataggtctttaccctctgtaatatagatcatttccggttttttccc 16698920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 18458856 - 18458812
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||    
T  18458856 ttaataggtctttaccccctgtaatataggtcatttccggttttc 18458812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 47022123 - 47022079
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| ||||||  |||||||    
T  47022123 ttaataggtctttaccccctgtaatataggtcatttatgattttc 47022079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 35007663 - 35007714
Alignment:
Q  315 ggattaataggtctttacccccc-gtaatatagatcattttcgattttctcc 365  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  35007663 ggattaataggtctttaaccccctgtaatatagatcattttcgattttctcc 35007714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 1499715 - 1499600
Alignment:
Q  186 cttgaatttcaaaaatgaattaaatatttttccaaacaacgaa-tttagtccaaatcaattcaaatactccaaaagattacattccctggttaaagttct 284  Q
    ||||||||| |  ||||| |||||||||||  ||||||  ||| ||| |||||| |||||| ||||| ||||||| | | |||||||| ||| || ||||    
T  1499715 cttgaattttaggaatgacttaaatattttctcaaacagtgaaatttggtccaagtcaatttaaatagtccaaaaaaatgcattccctagttcaatttct 1499616  T
Q  285 ctatccaaacacactc 300  Q
    ||||||||||||||||    
T  1499615 ctatccaaacacactc 1499600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 27866477 - 27866430
Alignment:
Q  315 ggattaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||| |||||||||||||||||| || ||||||||||||    
T  27866477 ggattaataggtccttaccccccgtaatataggtcgttttcgattttc 27866430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 20182554 - 20182513
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattt 353  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  20182554 tttgggttaataggtctttaccccccgtaatataggtcattt 20182513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 22116158 - 22116202
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||    
T  22116158 ttaataggtctttaccccctgtaatataggtcattttcggttttc 22116202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 29835099 - 29835143
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcg 356  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||||    
T  29835099 tttgggttaataggtctttaccccctgtaatataggtcattttcg 29835143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 19493502 - 19493459
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgatttt 361  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||    
T  19493502 ttaataggtctttaccccctgtaatataggtcattttcggtttt 19493459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 33641129 - 33641179
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||| ||||||||||||||||| | ||||||||| ||||||||| |||||    
T  33641129 tttgggttaataggtctttaccctctgtaatataggtcattttcggttttc 33641179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 18665678 - 18665723
Alignment:
Q  318 ttaataggtctttacccccc-gtaatatagatcattttcgattttc 362  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||    
T  18665678 ttaataggtctttacccccttgtaatataggtcattttcgattttc 18665723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 85723 - 85680
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||    
T  85723 ttaataggtctttacccct-gtaatataggtcattttcgattttc 85680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 17328095 - 17328139
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||    
T  17328095 ttaataggtctttaccccctgtaatataggtcatttccggttttc 17328139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 19641449 - 19641493
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||    
T  19641449 ttaataggtctttaccccctgtaatataggtcatttccggttttc 19641493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 19840042 - 19840086
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||    
T  19840042 ttaataggtctttaccccctgtaatataggtcatttccggttttc 19840086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 20182267 - 20182311
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||| |||| |||| ||||||||| |||||||||||||||    
T  20182267 ttaataggtttttatcccctgtaatataggtcattttcgattttc 20182311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 32449690 - 32449738
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    |||||||||||||||||||  |||||||| |||||| || |||||||||    
T  32449690 ttaataggtctttaccccctttaatataggtcatttccggttttctccc 32449738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 34635709 - 34635753
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||    
T  34635709 ttaataggtctttaccccctgtaatataggtcatttccggttttc 34635753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 37147554 - 37147598
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||    
T  37147554 ttaataggtctttaccccctgtaatataggtcatttccggttttc 37147598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 41859691 - 41859652
Alignment:
Q  315 ggattaataggtctttaccccccgtaatatagatcattttc 355  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  41859691 ggattaataggtcttta-cccctgtaatatagatcattttc 41859652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 13797665 - 13797617
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||||||    
T  13797665 ttaataggtctttaccccctgtaatataggtcatttccgattttctccc 13797617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 361
Target Start/End: Complemental strand, 29141214 - 29141168
Alignment:
Q  315 ggattaataggtctttaccccccgtaatatagatcattttcgatttt 361  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||||||    
T  29141214 ggattaataggtctttatcccctgtaatataggtcattttcgatttt 29141168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 8482532 - 8482644
Alignment:
Q  189 gaatttcaaaaatgaattaaatattttt--ccaaacaacgaatttagtccaaatcaattcaaatactccaaaagattacattccctggttaaagttctct 286  Q
    |||||| |||||||| ||||||||||||  | ||||   |||||| || || ||||||| ||||||| ||||| |||||||||| |   |||| ||||||    
T  8482532 gaattttaaaaatgacttaaatatttttttcaaaacgtggaatttggttcagatcaatttaaatacttcaaaaaattacattccttaaataaaattctct 8482631  T
Q  287 atccaaacacact 299  Q
    |||||||||||||    
T  8482632 atccaaacacact 8482644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 13279477 - 13279428
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcgatttt 361  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||| ||||    
T  13279477 tttgggttaataggtctttaccccctgtaatataggtcattttcggtttt 13279428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 38192965 - 38193014
Alignment:
Q  318 ttaataggtctttacccccc-gtaatatagatcattttcgattttctccc 366  Q
    |||||||||||||||||||| ||||||||| |||||| ||||||||||||    
T  38192965 ttaataggtctttacccccctgtaatataggtcatttccgattttctccc 38193014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 44568851 - 44568899
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    ||||||| ||||||||||| ||||||||| ||||||||| |||||||||    
T  44568851 ttaatagatctttaccccctgtaatataggtcattttcggttttctccc 44568899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 44569132 - 44569084
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    |||||||||||||| |||| |||||| || |||||||||||||||||||    
T  44569132 ttaataggtctttatcccctgtaatacaggtcattttcgattttctccc 44569084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 45163916 - 45163960
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||    
T  45163916 ttaataggtctttaccccttgtaatataggtcattttcgattttc 45163960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 31186671 - 31186714
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgatttt 361  Q
    ||||||||||||||||| | ||||||||| ||||||||||||||    
T  31186671 ttaataggtctttaccctctgtaatataggtcattttcgatttt 31186714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 353
Target Start/End: Complemental strand, 35913338 - 35913303
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattt 353  Q
    ||||||||||||||||||| ||||||||||||||||    
T  35913338 ttaataggtctttaccccctgtaatatagatcattt 35913303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 364
Target Start/End: Complemental strand, 25077837 - 25077791
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttctc 364  Q
    |||||||||||||||||||  |||||||||||||||||  |||||||    
T  25077837 ttaataggtctttaccccctttaatatagatcattttcagttttctc 25077791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 38193254 - 38193200
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||  | |||||||||    
T  38193254 tttgggttaataggtctttaccccctgtaatataggtcatttctggttttctccc 38193200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 39065383 - 39065421
Alignment:
Q  315 ggattaataggtctttaccccccgtaatatagatcattt 353  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  39065383 ggattaataggtctttaccccctgtaatataggtcattt 39065421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 39580226 - 39580176
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||| ||||||||||||||||||| ||||||||| |||||| || |||||    
T  39580226 tttgggttaataggtctttaccccctgtaatataggtcatttccggttttc 39580176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 6269531 - 6269568
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttc 355  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  6269531 ttaataggtctttaccccctgtaatataggtcattttc 6269568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 14079051 - 14079006
Alignment:
Q  318 ttaataggtctttacccccc-gtaatatagatcattttcgattttc 362  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||    
T  14079051 ttaataggtctttacccccatgtaatataggtcattttcgattttc 14079006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 14389079 - 14389034
Alignment:
Q  318 ttaataggtctttacccccc-gtaatatagatcattttcgattttc 362  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||    
T  14389079 ttaataggtctttacccccatgtaatataggtcattttcgattttc 14389034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 48104787 - 48104738
Alignment:
Q  313 ttggattaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    |||| |||||||||||||||| || ||||||||| ||||||||| |||||    
T  48104787 ttgggttaataggtctttacctcctgtaatataggtcattttcggttttc 48104738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 3307736 - 3307688
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcgattt 360  Q
    ||||| |||||| |||||||||||| ||||||||| |||||| ||||||    
T  3307736 tttgggttaataagtctttaccccctgtaatataggtcatttccgattt 3307688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 4517865 - 4517917
Alignment:
Q  315 ggattaataggtctttaccccc-cgtaatatagatcattttcgattttctccc 366  Q
    ||||||||||||||||||||||  ||||||||| |||||| ||||||| ||||    
T  4517865 ggattaataggtctttacccccttgtaatataggtcatttccgattttttccc 4517917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 19272503 - 19272467
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcatttt 354  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  19272503 ttaataggtctttaccccctgtaatataggtcatttt 19272467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 24845641 - 24845685
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    |||||||||||||||| || ||||||||| ||||||||| |||||    
T  24845641 ttaataggtctttacctcctgtaatataggtcattttcggttttc 24845685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 31116482 - 31116526
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  31116482 ttaataggtctttaccccctctaatatagatcattttcgattttc 31116526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 356
Target Start/End: Complemental strand, 22574084 - 22574046
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcg 356  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  22574084 ttaataggtctttaccccctgtaatatagatcattttcg 22574046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 13114395 - 13114444
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcgatttt 361  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||| ||||    
T  13114395 tttgggttaataggtctttaccccctgtaatataggtcattttcggtttt 13114444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 31852047 - 31852002
Alignment:
Q  318 ttaataggtctttacccccc-gtaatatagatcattttcgattttc 362  Q
    |||||||||||||||||||| ||||||||| ||||||||| |||||    
T  31852047 ttaataggtctttacccccctgtaatataggtcattttcggttttc 31852002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 33751977 - 33751932
Alignment:
Q  318 ttaataggtctttacccccc-gtaatatagatcattttcgattttc 362  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||    
T  33751977 ttaataggtctttacccctctgtaatataggtcattttcgattttc 33751932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 13114679 - 13114635
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||  ||||||||| |||||    
T  13114679 ttaataggtctttaccccctgtaatatatgtcattttcggttttc 13114635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 19325616 - 19325660
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||| |||||||||| || |||||    
T  19325616 ttaataggtctttaccccctgtaatttagatcatttccggttttc 19325660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 22362991 - 22362947
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    |||||||  |||||||||| ||||||||| |||||||||||||||    
T  22362991 ttaatagtgctttaccccctgtaatataggtcattttcgattttc 22362947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 31851761 - 31851805
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    |||||||||||||| |||| ||||||||| ||||||||| |||||    
T  31851761 ttaataggtctttatcccctgtaatataggtcattttcggttttc 31851805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 11281 - 11368
Alignment:
Q  186 cttgaatttcaaaaatgaattaaatatttttccaaacaa-cgaatttagtccaaatcaattcaaatactccaaaagattacattccct 272  Q
    ||||||||| |||||||| ||||||||||| ||||||||  |||||| |  ||| |||||| ||||||||||||| ||||| ||||||    
T  11281 cttgaattttaaaaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaatactccaaaaaattactttccct 11368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 26306 - 26355
Alignment:
Q  313 ttggattaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||| |||||    
T  26306 ttgggttaataggtctttaccccctgtaatataggtcattttcggttttc 26355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 4051 - 4015
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcatttt 354  Q
    ||||||||||||||||||| |||||||||||||||||    
T  4051 ttaataggtctttaccccctgtaatatagatcatttt 4015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 4487 - 4443
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcg 356  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||||    
T  4487 tttgggttaataggtctttaccccctgtaatataggtcattttcg 4443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 29104447 - 29104495
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    ||||||||||||||||||| ||||||||| ||||||||  |||||||||    
T  29104447 ttaataggtctttaccccctgtaatataggtcattttcagttttctccc 29104495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 40657962 - 40657918
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcg 356  Q
    |||||||||||||| |||||||||| ||||||||| |||||||||    
T  40657962 tttggattaatagggctttaccccctgtaatataggtcattttcg 40657918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 16505006 - 16504956
Alignment:
Q  313 ttggattaataggtctttacccccc-gtaatatagatcattttcgattttc 362  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||| |||||    
T  16505006 ttggatgaataggtctttacccccctgtaatataggtcattttcggttttc 16504956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 12399645 - 12399596
Alignment:
Q  313 ttggattaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    |||| ||||||||||||||||||| ||||||||| | ||||||| |||||    
T  12399645 ttgggttaataggtctttaccccctgtaatataggttattttcggttttc 12399596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 2870944 - 2870896
Alignment:
Q  312 tttggattaataggtctttaccccccgtaatatagatcattttcgattt 360  Q
    ||||| |||||||||||||||| || ||||||||| |||||| ||||||    
T  2870944 tttgggttaataggtctttacctcctgtaatataggtcatttccgattt 2870896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 5747579 - 5747535
Alignment:
Q  318 ttaataggtctttacccccc-gtaatatagatcattttcgatttt 361  Q
    |||||||||||||||||| | |||||||| |||||||||||||||    
T  5747579 ttaataggtctttacccctctgtaatataaatcattttcgatttt 5747535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 10976801 - 10976757
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||    
T  10976801 ttaataggtctttaccccctgtaatataggtcatttccggttttc 10976757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 22551525 - 22551561
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcatttt 354  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  22551525 ttaataggtctttaccccctgtaatataggtcatttt 22551561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 4205 - 4161
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttc 362  Q
    ||||||||||||||||||| ||||||||| |||||| || |||||    
T  4205 ttaataggtctttaccccctgtaatataggtcatttccggttttc 4161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 34885 - 34845
Alignment:
Q  313 ttggattaataggtctttaccccccgtaatatagatcattt 353  Q
    |||| ||||||||||||||||||| ||||||||| ||||||    
T  34885 ttgggttaataggtctttaccccctgtaatataggtcattt 34845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 1830 - 1878
Alignment:
Q  318 ttaataggtctttaccccccgtaatatagatcattttcgattttctccc 366  Q
    ||||||||||||||||||| ||||||||| |||||| |  |||||||||    
T  1830 ttaataggtctttaccccctgtaatataggtcatttccagttttctccc 1878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University