View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_low_10 (Length: 341)
Name: NF5556_low_10
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 6730130 - 6729812
Alignment:
| Q |
15 |
aatgatggaccttctgaatagttgggcctttttggcaacagtagtttattattattgtaattccttcaagtggcctagagcccattagtattaggtctag |
114 |
Q |
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| T |
6730130 |
aatgatggaccttctgaatagttgggcctttttggcaacagtagtttattattattgtaattccttcaagtggcctagagcccattagtattaggtctag |
6730031 |
T |
|
| Q |
115 |
cagggtatacaaccctagctatataagtgtatgacttgcctcattgatatcatgaatgaagtttttattttatcagtttatttaaattccagcattagtc |
214 |
Q |
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| T |
6730030 |
tagggtatacaaccctagctatataagtgtatgacttgtctcattgatatcatgaatgaagtttttattttatcagtttatttaaattccagcattagtc |
6729931 |
T |
|
| Q |
215 |
ttctagcatagctcctagtccgatcgaataatccttgagcttagtatcattggtgctttcattccttgatttcatgcctcctaaacccacatctaccacc |
314 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6729930 |
ttctagcatagctcctagtccgatcaaataatccttgagcttagtatcattggtgctttcattccttgatttcatgcctcctaaacccacatccaccacc |
6729831 |
T |
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| Q |
315 |
tccaaagaccttgatgatg |
333 |
Q |
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|||||||||||||| |||| |
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| T |
6729830 |
tccaaagaccttgaagatg |
6729812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 6727174 - 6726950
Alignment:
| Q |
10 |
caacgaatgatggaccttctgaatagttgggcctttttggcaacagtagtttattattattgtaattccttcaagtggcctagagcccattagtattagg |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6727174 |
caacaaatgatggaccttctgaatagttgggcctttttggcaacagtagtttattattattgtaattccttctagtggcctagagcccattagtattagg |
6727075 |
T |
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| Q |
110 |
tctagcagggtatacaaccctagctatataagtgtatgacttgcctcattgatatcatgaatgaagtttttattttatcagtttatttaaattccagcat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6727074 |
tctagcagggtatacaaccctagctatataagtgtatgacttgcctcattgatatcatgaatgaagtttttattttatcagtttatttaaattccagcat |
6726975 |
T |
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| Q |
210 |
tagtcttctagcatagctcctagtc |
234 |
Q |
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||||||||||||||||||| ||||| |
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| T |
6726974 |
tagtcttctagcatagctcatagtc |
6726950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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