View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_low_11 (Length: 332)
Name: NF5556_low_11
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 332
Target Start/End: Original strand, 295035 - 295364
Alignment:
| Q |
8 |
gataattcttgaaactgaagtagtcctgatcgaaggaaagaaggaatgtggcccccaccaacctccaacaaaccactggtgacattattatcaaaaaatg |
107 |
Q |
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| T |
295035 |
gataattcttgaaactgaagtagtcctgatcgaaggaaagaaggaatgtggtccccaccaacctccaacaaaccactggtgacattattatcaaaaaatg |
295134 |
T |
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| Q |
108 |
cattacactttgtagtgttggtattgacacggtttgtgttagttaagaaagaaacatttgtaggttttaagggacagaagaaacagattgttgatgttcg |
207 |
Q |
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| T |
295135 |
cattacactttgtagtgttggtattgacacggtttgtgttagttaagaaagaaacatttgtaggttttaagggacagaagaaacagattgttgatgttcg |
295234 |
T |
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| Q |
208 |
atgcttaagtatagtggtaacagttggagttggatggagcaaagaagccatattgt-----tatgatatgatatgatgctcattcattcattcgttccaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
295235 |
atgcttaagtatagtggtaacagttggagttggatggagcaaagaagccatattgttatgatatgatatgatatgatgctcattcattcattcgttccaa |
295334 |
T |
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| Q |
303 |
gttcaaactacaattaacatagtaacatca |
332 |
Q |
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| T |
295335 |
gttcaaactacaattaacatagtaacatca |
295364 |
T |
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