View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5556_low_12 (Length: 317)
Name: NF5556_low_12
Description: NF5556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5556_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 52087400 - 52087703
Alignment:
| Q |
1 |
atgttgtagaaccaagtcgttatcgtgaacctcggtgacccaattaagagccatggtttcatcaactataggcttgttatctttgatgactgccaagtgt |
100 |
Q |
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| T |
52087400 |
atgttgtagaaccaagtcgttatcgtgaacctcggtgacccaattaagagccatggtttcatcaactataggcttgttatctttgatgactgccaagtgt |
52087499 |
T |
|
| Q |
101 |
gtagggtgcactgcataggcatggagatcttccttggatctgaatctactatggatcatgtgagtgaaattgaaagatgaaatggaattggaggattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52087500 |
gtagggtgcactgcataggcatggagatcttccttggatctgaatctactatggatcatgtgagtgaaattgaaagatgaaatggaattggaggattgaa |
52087599 |
T |
|
| Q |
201 |
tacttaccaacggacccatagtcaagtgaagtggctcttcaagagagataagggaattcacttgcttcaccatggaatcaatcgctgattgtggaacgtc |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52087600 |
tacttaccaacggacccatagttaagtgaagtggctcttcaagagagataagggaattcacttgcttcaccatggaatcaatcgctgattgtggaacgtc |
52087699 |
T |
|
| Q |
301 |
ttct |
304 |
Q |
| |
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|||| |
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| T |
52087700 |
ttct |
52087703 |
T |
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